Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c23f
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0306 + 17307166-17309091                                         33   0.15 
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767...    33   0.20 
05_01_0141 - 937428-937717,938483-938705                               32   0.47 
07_01_0311 - 2211824-2212410,2213275-2213290                           28   5.7  
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600           28   5.7  
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    28   7.6  
09_04_0182 + 15376025-15376498                                         28   7.6  

>12_02_0306 + 17307166-17309091
          Length = 641

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = -3

Query: 412 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 239
           G+G T+ G     GA +G S T  G GT+  G A   G   G   TF   G+    GV
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDAR-GGARDGVGETFIGVGAGAGAGV 529



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -3

Query: 412 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 239
           G+G T+ G     GA +G S T  G GT+  G A   G   G   T    G+    GV
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGAR-GGARDGVGVTVTVVGAGAGAGV 262



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -3

Query: 412 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 239
           G+G T+ G     GA +G S T  G GT+  G A   G   G   T    G+    GV
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGAR-GGARDGVGVTVTGVGAGAGAGV 413



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
 Frame = -3

Query: 412 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 233
           G+G T+ G     GA +G S T  G GT+  G A   G   G       +G     G  +
Sbjct: 95  GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGAR-GGARDGVGVRL--TGGGAGAGAGV 151

Query: 232 AASLMLIRMWTRGVSC-PGTRGPTWTGDGTMGASTRAGPTSG 110
            +SL  +     G  C  G RG    G G  GA      T G
Sbjct: 152 GSSLAGV---GGGTLCGGGARGGARDGGGA-GAGVGCSLTGG 189



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 412 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 311
           G+G T+ G     GA +G S T  G GT+  G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430


>01_01_0972 +
           7672048-7672390,7672546-7672709,7672864-7672961,
           7673040-7673361,7674021-7675220
          Length = 708

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = -3

Query: 337 LGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTWT 158
           LGT+ +  AM TG TAGF  +F+ S S L        S  +I+ WTR ++  G     +T
Sbjct: 43  LGTLFSFMAMRTGLTAGFVPSFNMSASLL--------SFFIIKSWTRLMARCGVASQPFT 94


>05_01_0141 - 937428-937717,938483-938705
          Length = 170

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 464 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRL 285
           ++SH HG H G+        GH+GG+   H G+   L   +   +  G     HG +  L
Sbjct: 100 KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGL 153

Query: 284 F 282
           F
Sbjct: 154 F 154



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 476 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 366
           GH+G +   H GH G +   H    H GG+   H G+
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 476 GHNGRVSHDHGGHQGHVTNVHWA--RGHNGGVSHDHRGY 366
           GH+G      GGH GH     +    GH+GG+   H G+
Sbjct: 122 GHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFGGHHGF 160


>07_01_0311 - 2211824-2212410,2213275-2213290
          Length = 200

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
 Frame = -3

Query: 409 LGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGF--SSTFDCSGSTLSTGVA 236
           L A  AG+A I G     +A   G+G  +    + T  TAG   S+TF  +G     G A
Sbjct: 61  LAAGTAGTAGIGGNVAAGTAGTAGIGGTVTAGTVGTAGTAGIGGSATFGTAG---MGGNA 117

Query: 235 LAASLMLIRMWTRGVSCPGTRGPTWTGD----GTMGASTRAG 122
           +  ++    +   G    GT G    G     GT+G  T AG
Sbjct: 118 VFGTIGTAGI--GGSVAAGTAGMAGIGGNVTAGTVGTGTAAG 157


>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
          Length = 585

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -3

Query: 358 PSATITGLGTMMAGSAMITGE-TAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCP 182
           P+  +   G  M G  + +G  +A   +T        S G   AA  M + +   G++  
Sbjct: 138 PTGGVPSGGLQMDGGGLPSGGLSAVMLTTGGAHAGGASGGELKAAFHMPVVVPGSGLAGD 197

Query: 181 GTRGPTWTGDGTMGASTRAGPTSGLS 104
           G+ G    G G M ++T +GPT+G S
Sbjct: 198 GSSGLA-RGSGAMFSNTSSGPTAGSS 222


>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 479 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 378
           R H+ R SH H  H+ H T +   R H+    HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727


>09_04_0182 + 15376025-15376498
          Length = 157

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = -3

Query: 412 GLGATMAGSATITGATLGPSA-TITGLGTMMAGSAMITGETAGF-SSTFDCSGSTLSTGV 239
           G G    G     G  LGP   +++G G+  +GSA   G T+G  S +    G++ S G 
Sbjct: 52  GSGGVGIGVGVGVGVGLGPGGVSVSGSGSG-SGSAAGVGSTSGSRSGSVSVGGASSSAGS 110

Query: 238 ALAASLMLIRMWTRGVSCPGTRGPTWTGDGT-MGASTRAGPTSGLS 104
           +  +S       +R  S  G+   +  G G  +G    +G  SGLS
Sbjct: 111 SAGSSAG--SGGSRTGSSAGSSAGSSGGSGLGIGFGQGSGSGSGLS 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,861,476
Number of Sequences: 37544
Number of extensions: 199532
Number of successful extensions: 789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)