Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c22f
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    71   5e-14
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.5  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    26   2.0  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   2.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   2.6  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   2.6  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   3.4  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   3.4  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   3.4  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   4.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   4.5  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   6.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    24   7.9  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    24   7.9  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    24   7.9  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 71.3 bits (167), Expect = 5e-14
 Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
 Frame = +1

Query: 67  LDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVE---SAKWKAWN 237
           +   F+Q A  V+  K  P+ DE L LY+L+KQAT+GD N  +P GL++     KW AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKP-GLLDLKGKFKWNAWE 59

Query: 238 GRKGISQDDAKKQYIENAEKLHSKY 312
             KG S++DA  +YI   ++L +KY
Sbjct: 60  ELKGKSKEDAASEYISFVDELKTKY 84


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 320  IYAYLEWSFSAFS-MYCFLASSWEMP 246
            ++ +L W  +  + +YCF  SSW+ P
Sbjct: 4043 LFFFLSWLHATLAEIYCFTCSSWKEP 4068


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 191 AMLTSPMVACLYREYSARFSSSLGLVFQFLTLSA 90
           AML+SP    + ++YS  F S   ++ Q L ++A
Sbjct: 73  AMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTA 106


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 218 PSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLRIK*ISYLN 355
           P   H  V+  SP T   +N S+   NS+P   KLL+    I  LN
Sbjct: 44  PYSDHARVSN-SPNTHRENNPSRSTDNSSPFLIKLLISFTPIYVLN 88


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
 Frame = +2

Query: 65  LSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAPSG------ 226
           +S +++N SP      R +P T+  L   P     P  +  +P+      +P        
Sbjct: 385 VSRNSNNNSPEGYDNNRTNP-TVNNLPSYPTNLARPKAIKPMPTSIHGQTSPLSPIPPVH 443

Query: 227 -RHGTVAKASPKTMPRSNTSKMRRNSTPNTHKL 322
             HG V+   P  +P  ++  MR +STP +H L
Sbjct: 444 TTHGLVSDIRP--LPSVSSPIMRADSTPISHNL 474


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 103 RNWKTKPSDDENLALYSLYKQATIGDVNIAQPSG 204
           RNW+T   DD +LA   + K++   +++ ++  G
Sbjct: 531 RNWQTTVFDDSDLATMGVNKESLSNEMDYSKSLG 564


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 242 RPFHAFHLALSTRPLGWAMLTSPMV 168
           + FHA  L L +RP G+ +  +P++
Sbjct: 302 KKFHAVRLTLRSRPAGFGLRCNPIL 326


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 148 YSLYKQATIGDVNIAQPSGLVESAKW 225
           Y L+  + + D+N A+   +VESAKW
Sbjct: 150 YKLF-DSYVYDINTAEQERVVESAKW 174


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 91  ADKVRNWKTKPSDDENLALYSLYK 162
           A+ V NW  + +D ENL++ S ++
Sbjct: 526 AENVNNWMLETNDHENLSMQSHFE 549


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 200 AVLWRAPSGR--HGTVAKASPKTMPRSNTSKMRRNSTPNT 313
           AVL R PSG    GT+A   P ++   N S  RRNS+ ++
Sbjct: 453 AVLNR-PSGETCSGTLALYRPNSLALKNQSSHRRNSSTSS 491


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 307 WSGVSPHFR-CIASWHRLGRCLCDRSM 230
           W   SP+ R  I  +HRLGR L +R +
Sbjct: 457 WRLASPNIRFLITLYHRLGRILRERKL 483


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 186 HCPAQRSCGERQVEGMERSQRHLPRRCQE 272
           +CPAQR  G   V G   S+R + +  +E
Sbjct: 486 YCPAQREYGRLNVVGTLMSKRKIMKLVKE 514


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 174  YGSLLVQGVQRKVLIVTGLGLPVPNLIGDLFELLVERHFVLSFEIRR 34
            + +L +   +    I+  +    P+L+   F LLV+   VL FE +R
Sbjct: 2805 FKTLFISFTEEHRKIINMMVFTTPSLMSGSFSLLVKNPKVLEFENKR 2851


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 28  TLPPDLKR*HKMSLDEQFKQVADKVRNWKTKPSDDENL 141
           T PP ++   K  LD   K++ D+    + +PS D  L
Sbjct: 360 TQPPSMRNDWKDYLDNNSKEILDQFGFLQKRPSHDTPL 397


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 191 AMLTSPMVACLYREYSARFSSSLGLVFQFLTLSA 90
           AML+SP    + ++YS  F S + ++ + L ++A
Sbjct: 73  AMLSSPFTERIGKKYSICFFSGVYIIAELLLVTA 106


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 180 ITYGSLLVQGVQRKVLIVTGLGLPVPNLIGDLFELLVERHFVLS 49
           I +G  +  G+ ++  +   LG+  PN +G L + LV  +  +S
Sbjct: 285 ILHGECVAIGMVKEAELARYLGILKPNAVGRLTKCLVSYNLPIS 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,846,486
Number of Sequences: 5004
Number of extensions: 39556
Number of successful extensions: 121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)