Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c21r
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1166 - 24461881-24462013,24462255-24462643,24462877-244629...    31   1.0  
04_01_0394 - 5174718-5174801,5174914-5174959,5175900-5176013,517...    29   4.1  
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171     28   5.4  
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    28   7.2  
05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197...    27   9.5  

>07_03_1166 -
           24461881-24462013,24462255-24462643,24462877-24462948,
           24463718-24463887,24464232-24464362,24464744-24464860,
           24464969-24465351,24465582-24465764
          Length = 525

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 321 KVKRSHLHLICHAFVSRRTAPTEDFPATAEAL 416
           K ++S +H + H    ++TAP  +FP  AE L
Sbjct: 259 KQRKSWVHSVSHTGDEKKTAPLREFPGAAERL 290


>04_01_0394 -
           5174718-5174801,5174914-5174959,5175900-5176013,
           5176323-5176441,5176518-5176589,5176733-5176873,
           5177016-5177096,5177378-5177479,5177828-5177865,
           5177985-5178087,5178223-5178345,5181004-5181117
          Length = 378

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 278 IAFSSFNSASSHDRRHRLPEQTRNKLIR 195
           I+  S NSASSHDRR +L E   + + R
Sbjct: 207 ISLMSDNSASSHDRRTKLLESAVSSICR 234


>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
          Length = 1054

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 394 FPRPPKRCDATPRVS-WKDRSGSEP 465
           + +PPK  DA PR S WK R   +P
Sbjct: 116 YGKPPKAADAAPRGSMWKHRPSKKP 140


>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 520 DEYRTPDDVGWPAMKFQFVTNCTLSLVPQSIVITV 624
           D    PDD+ W   +F F T   LS  P S   TV
Sbjct: 178 DTETEPDDLSWEEGRFYFYTRVVLSADPSSGNCTV 212


>05_06_0237 +
           26618195-26618425,26618518-26618640,26619569-26619736,
           26619824-26621497
          Length = 731

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 295 GVESHFKHKK*RDHTST*SVTLLYHAVLLQLKIFPRPPKRCDATPRVSWKDRSGSEP 465
           G E  + H+    H+    VT+ Y A L  LK+F     RC++   +      G+ P
Sbjct: 472 GAEEAYTHQG--QHSQFTMVTMTYEARLWNLKLFVEHYSRCESVREIVVVWNKGNHP 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,071,727
Number of Sequences: 37544
Number of extensions: 340593
Number of successful extensions: 695
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)