Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c21r
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z66523-8|CAE17855.1|  155|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z72506-5|CAA96616.2|  259|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical
           protein T04H1.8 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 142 TNLVVKKYPLQSSMFTSSRISLFLVCSGSRCL 237
           TN++ KK+  Q+ +  SS+I LF+   G   L
Sbjct: 344 TNIIFKKFLPQTDLLASSKIDLFVTHCGQNSL 375


>Z66523-8|CAE17855.1|  155|Caenorhabditis elegans Hypothetical
           protein M05D6.8 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 460 EP*NCQDPLSN-SDMKPFCSRDEYRT 534
           +P NC D     S +KP C+R+EY+T
Sbjct: 87  KPINCYDISKRCSKVKPLCTRNEYKT 112


>Z72506-5|CAA96616.2|  259|Caenorhabditis elegans Hypothetical
           protein F07A5.4 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -1

Query: 343 WRCDLFT----FYV*SEIQLLQLNPGSHFLHSIRLPHTTED 233
           W C LF+    FY   +I  LQ+N     L+S RLP T +D
Sbjct: 13  WVCLLFSIGWIFYQNIQINELQINRHKRELNSNRLPKTDDD 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,119
Number of Sequences: 27780
Number of extensions: 298389
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)