Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c21f
         (629 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4FLJ4 Cluster: Galactofuranosyl transferase; n=6; Acti...    34   3.2  
UniRef50_Q72KK4 Cluster: Hypothetical conserved protein; n=7; Th...    33   7.5  
UniRef50_A6G607 Cluster: Nicotinate phosphoribosyltransferase re...    33   7.5  
UniRef50_Q55GS8 Cluster: Diaminopimelate epimerase; n=2; Dictyos...    32   9.9  

>UniRef50_A4FLJ4 Cluster: Galactofuranosyl transferase; n=6;
           Actinomycetales|Rep: Galactofuranosyl transferase -
           Saccharopolyspora erythraea (strain NRRL 23338)
          Length = 657

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 167 TVSWFAARSIFPAHAWSRVTTLRRSRENLQLEQYGVIQ-KRDRLSGG 304
           TVS+ A  + FPA  W R TT+   R NL LE  G +   R R  GG
Sbjct: 83  TVSFSAYFNAFPAGYWRRWTTITAIRLNLMLEGPGRVDVYRSRADGG 129


>UniRef50_Q72KK4 Cluster: Hypothetical conserved protein; n=7;
           Thermus thermophilus|Rep: Hypothetical conserved protein
           - Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM
           7039)
          Length = 315

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
 Frame = +2

Query: 155 QGILTVSWFAARSIFP---AHAWSRVTTLRRSR--ENLQLEQYGVIQ--KRDRLSG 301
           +G+L  +W+AAR +      H W  VT LR +R  + +QL ++G  +  K  RL G
Sbjct: 147 EGVLFDAWYAARQVLEWLHVHGWPFVTRLRSNRVLDGVQLRRHGGTRWVKTGRLRG 202


>UniRef50_A6G607 Cluster: Nicotinate phosphoribosyltransferase
           related protein; n=1; Plesiocystis pacifica SIR-1|Rep:
           Nicotinate phosphoribosyltransferase related protein -
           Plesiocystis pacifica SIR-1
          Length = 510

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -1

Query: 278 VSRRTAPTEDFPATAEAL*RDSTRELER*IWQRTMKLSRSPVQLRHEAILQPRRISNA 105
           V  R A   D PA        + R   R  W+R +KLS +P++     ILQ RR+ +A
Sbjct: 332 VGTRLATAYDQPALGGVYKLSALRPDARAPWRRMVKLSSTPIKTSTPGILQVRRMRDA 389


>UniRef50_Q55GS8 Cluster: Diaminopimelate epimerase; n=2;
           Dictyostelium discoideum|Rep: Diaminopimelate epimerase
           - Dictyostelium discoideum AX4
          Length = 514

 Score = 32.3 bits (70), Expect = 9.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -2

Query: 172 NCQDPLSNSDMKPFCSRDEYRTPDDVGWPAMKFQFVTNCTLSLVPQSIVITVH 14
           N Q+P  N D+KPF SR+  +T +   +   + + ++  T++ + Q + I  H
Sbjct: 228 NNQEPHHNEDLKPFFSRNRLKTLNQTPYLLFESRSISIYTIAGIQQCMTIPQH 280


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,921,247
Number of Sequences: 1657284
Number of extensions: 11886142
Number of successful extensions: 27174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27171
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)