Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c21f
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    30   0.32 
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   3.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   9.0  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   9.0  

>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 357 VKLEELNLTLNIKSEEITPPLNLSRFCITPY 265
           +K+EE+N T ++ S    PP N+S F + PY
Sbjct: 227 IKMEEINKT-SVASSTNLPPANMSLFIMKPY 256


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 471 YNLRCSRLHVLAYSLFVQAADV 406
           +N++CS +H LAY   +  AD+
Sbjct: 336 FNVKCSTMHGLAYGAILAQADL 357


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = +3

Query: 45  KESVQLVT-NWNFIAGQ-PTSSGVRYSSRLQNGFMSELDRGS*Q-----FHGSLPDLSFQ 203
           K SV++V  N N    Q PT++    +  L  G  SE D+   Q         L DLS  
Sbjct: 584 KSSVKIVVDNANDDTDQAPTTNSSSLNENLLGGHASENDKSLKQSPFQKLTRRLSDLSVN 643

Query: 204 LTRGVASQRFGGRGKIFSWSS 266
            +  ++ Q F     IFS SS
Sbjct: 644 SSGQISKQDFDNSNSIFSESS 664


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 472 LQSSMFTSSRISLFLVCSGSRCLRSCEEAELNEENAIQG 356
           L++  F     SL    SG  CL SC +  L   N I G
Sbjct: 20  LKNQNFVGEITSLSFDDSGELCLASCTDDTLQLYNCISG 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,465
Number of Sequences: 5004
Number of extensions: 51950
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)