Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c21f
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.77 
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               28   5.4  

>SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 396 HDRRHRLPE--QTRNKLIREDVNIED--CRGYFFTTKFVCLFKCR 518
           H+R+  L +  Q R +L R  VN E   CR  F+ +K VCL  C+
Sbjct: 481 HNRQKALAQADQDRYRLFRNCVNRERNVCRAKFYNSKVVCLKDCK 525


>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 1131

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 103 QAFDIRLGCRMASCLSWTGDLDSFMVRCQIY--LSSSRVESR 222
           +A  ++     A  L W GD++ ++ R + Y  L  +R ESR
Sbjct: 98  RAIHVKASAMRAKRLLWVGDIEGYIERLECYFELMKTRTESR 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,474,394
Number of Sequences: 59808
Number of extensions: 378207
Number of successful extensions: 905
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)