Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c21f
         (629 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127728-1|BAC87104.1|  639|Homo sapiens lucosaminyltransferase ...    30   7.8  
AK056514-1|BAB71201.1|  579|Homo sapiens protein ( Homo sapiens ...    30   7.8  

>AK127728-1|BAC87104.1|  639|Homo sapiens lucosaminyltransferase
           IV-homolog (HGNT-IV-H).  protein.
          Length = 639

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 280 LYHAVLLQLKIFPRPPKRCDATPRVSWKDRS 188
           L H   LQ  +FP PP   + TP   WK+ S
Sbjct: 129 LEHKADLQQHLFPVPPGHLECTPESLWKELS 159


>AK056514-1|BAB71201.1|  579|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31952 fis, clone NT2RP7007221, weakly similar to
           Rattus norvegicus schlafen-4 (SLFN-4) mRNA. ).
          Length = 579

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 280 LYHAVLLQLKIFPRPPKRCDATPRVSWKDRS 188
           L H   LQ  +FP PP   + TP   WK+ S
Sbjct: 69  LEHKADLQQHLFPVPPGHLECTPESLWKELS 99


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,377,818
Number of Sequences: 237096
Number of extensions: 1787931
Number of successful extensions: 3328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3328
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)