Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c21f
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   9.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 393 SHDRRHRLPEQT-RNKLIREDVNIEDCRGYFFTTKFVCL 506
           ++D+   L + T RNKL+R   +     G  FTT   C+
Sbjct: 124 ANDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTLACM 162


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 241 RPPKRCDATPRVSWKDRSG 185
           R  KRC+AT   SW    G
Sbjct: 359 RAVKRCNATGAFSWIGSDG 377


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 460 SKIVEDIFLLLNLFVSSSAGK*KLNNFNGYGG 555
           S++V   FLLL +F     G      F G GG
Sbjct: 2   SRLVLASFLLLAIFSMLVGGFGGFGGFGGLGG 33


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 212 TRELER*IWQRTMKLSRSPV 153
           TREL   IWQ+ +K S + +
Sbjct: 282 TRELTIQIWQQIVKFSLNSI 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,833
Number of Sequences: 438
Number of extensions: 3617
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)