Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c21f
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55480.1 68418.m06910 glycerophosphoryl diester phosphodieste...    31   0.48 
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR...    29   3.4  

>At5g55480.1 68418.m06910 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to Glycerophosphoryl diester phosphodiesterase
           precursor  (Glycerophosphodiester phosphodiesterase)
           (Surface-exposed lipoprotein D) (Protein D)
           (ImmunoglobulinD-binding protein) (IGD-binding protein)
           (SP:Q06282) {Haemophilus influenzae}
          Length = 766

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 209 AWSRVTTLRRSRENLQLEQYGVIQK-RDRLSGGVISSLFMFKVRFNSSNLT 358
           AWS + TLR + EN    ++ + +  R+R SG  +S      +  NSS+LT
Sbjct: 449 AWSEIQTLRPAIENPYSREFTMFRNPRERSSGKFVSLSDFLNLAKNSSSLT 499


>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1179

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 484 KKYPLQSSMFTSSRISLFLVCSGSRCLRSCE-EAELN 377
           KK PL  S F   R   +L    SRC R CE +++LN
Sbjct: 561 KKLPLDRSTFIKMRNLRYLKFYSSRCDRECEADSKLN 597


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,641
Number of Sequences: 28952
Number of extensions: 275214
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)