Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c20f
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 71 5e-14
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.5
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 26 2.0
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 2.0
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 2.6
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 2.6
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 3.5
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 3.5
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 3.5
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.6
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 4.6
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 6.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 6.1
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 24 8.0
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 24 8.0
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 24 8.0
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 71.3 bits (167), Expect = 5e-14
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Frame = +3
Query: 69 LDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVE---SAKWKAWN 239
+ F+Q A V+ K P+ DE L LY+L+KQAT+GD N +P GL++ KW AW
Sbjct: 1 MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKP-GLLDLKGKFKWNAWE 59
Query: 240 GRKGISQDDAKKQYIENAEKLHSKY 314
KG S++DA +YI ++L +KY
Sbjct: 60 ELKGKSKEDAASEYISFVDELKTKY 84
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 1.5
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 322 IYAYLEWSFSAFS-MYCFLASSWEMP 248
++ +L W + + +YCF SSW+ P
Sbjct: 4043 LFFFLSWLHATLAEIYCFTCSSWKEP 4068
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 193 AMLTSPMVACLYREYSARFSSSLGLVFQFLTLSA 92
AML+SP + ++YS F S ++ Q L ++A
Sbjct: 73 AMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTA 106
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 2.0
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 220 PSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLRIK*ISYLN 357
P H V+ SP T +N S+ NS+P KLL+ I LN
Sbjct: 44 PYSDHARVSN-SPNTHRENNPSRSTDNSSPFLIKLLISFTPIYVLN 88
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 2.6
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = +1
Query: 67 LSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAPSG------ 228
+S +++N SP R +P T+ L P P + +P+ +P
Sbjct: 385 VSRNSNNNSPEGYDNNRTNP-TVNNLPSYPTNLARPKAIKPMPTSIHGQTSPLSPIPPVH 443
Query: 229 -RHGTVAKASPKTMPRSNTSKMRRNSTPNTHKL 324
HG V+ P +P ++ MR +STP +H L
Sbjct: 444 TTHGLVSDIRP--LPSVSSPIMRADSTPISHNL 474
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 105 RNWKTKPSDDENLALYSLYKQATIGDVNIAQPSG 206
RNW+T DD +LA + K++ +++ ++ G
Sbjct: 531 RNWQTTVFDDSDLATMGVNKESLSNEMDYSKSLG 564
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 244 RPFHAFHLALSTRPLGWAMLTSPMV 170
+ FHA L L +RP G+ + +P++
Sbjct: 302 KKFHAVRLTLRSRPAGFGLRCNPIL 326
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 3.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 150 YSLYKQATIGDVNIAQPSGLVESAKW 227
Y L+ + + D+N A+ +VESAKW
Sbjct: 150 YKLF-DSYVYDINTAEQERVVESAKW 174
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 93 ADKVRNWKTKPSDDENLALYSLYK 164
A+ V NW + +D ENL++ S ++
Sbjct: 526 AENVNNWMLETNDHENLSMQSHFE 549
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 4.6
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 202 AVLWRAPSGR--HGTVAKASPKTMPRSNTSKMRRNSTPNT 315
AVL R PSG GT+A P ++ N S RRNS+ ++
Sbjct: 453 AVLNR-PSGETCSGTLALYRPNSLALKNQSSHRRNSSTSS 491
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 4.6
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 309 WSGVSPHFR-CIASWHRLGRCLCDRSM 232
W SP+ R I +HRLGR L +R +
Sbjct: 457 WRLASPNIRFLITLYHRLGRILRERKL 483
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 188 HCPAQRSCGERQVEGMERSQRHLPRRCQE 274
+CPAQR G V G S+R + + +E
Sbjct: 486 YCPAQREYGRLNVVGTLMSKRKIMKLVKE 514
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 6.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 176 YGSLLVQGVQRKVLIVTGLGLPVPNLIGDLFELLVERHFVLSFEIRR 36
+ +L + + I+ + P+L+ F LLV+ VL FE +R
Sbjct: 2805 FKTLFISFTEEHRKIINMMVFTTPSLMSGSFSLLVKNPKVLEFENKR 2851
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 24.2 bits (50), Expect = 8.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 30 TLPPDLKR*HKMSLDEQFKQVADKVRNWKTKPSDDENL 143
T PP ++ K LD K++ D+ + +PS D L
Sbjct: 360 TQPPSMRNDWKDYLDNNSKEILDQFGFLQKRPSHDTPL 397
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 24.2 bits (50), Expect = 8.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 193 AMLTSPMVACLYREYSARFSSSLGLVFQFLTLSA 92
AML+SP + ++YS F S + ++ + L ++A
Sbjct: 73 AMLSSPFTERIGKKYSICFFSGVYIIAELLLVTA 106
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 24.2 bits (50), Expect = 8.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 182 ITYGSLLVQGVQRKVLIVTGLGLPVPNLIGDLFELLVERHFVLS 51
I +G + G+ ++ + LG+ PN +G L + LV + +S
Sbjct: 285 ILHGECVAIGMVKEAELARYLGILKPNAVGRLTKCLVSYNLPIS 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,516
Number of Sequences: 5004
Number of extensions: 39122
Number of successful extensions: 121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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