Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c20f
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847... 73 1e-13
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369... 71 3e-13
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86... 63 7e-11
03_06_0582 - 34891613-34891795,34892407-34892466,34893134-348932... 45 2e-05
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 42 2e-04
03_01_0463 + 3551764-3551897,3551989-3552046,3552148-3552255,355... 29 1.1
04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455 29 1.4
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 29 1.9
11_06_0715 + 26552962-26553510,26553578-26555746 28 2.5
07_01_0703 - 5295561-5297523,5299344-5299462 28 2.5
05_02_0150 - 7111090-7111225,7111251-7111458,7111705-7111774,711... 27 4.4
08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261... 27 5.8
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 27 5.8
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 27 5.8
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 27 5.8
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262... 27 5.8
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 27 5.8
12_02_0691 - 22195142-22196197 27 7.7
03_06_0051 + 31290431-31290610,31290727-31290849,31291771-312919... 27 7.7
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353... 27 7.7
>03_05_0107 -
20883353-20883627,20883739-20883801,20884608-20884725,
20885012-20885023
Length = 155
Score = 72.5 bits (170), Expect = 1e-13
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +3
Query: 63 MSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLV--ESAKWKAW 236
M L E F++ A+KV+ S+++ L LY LYKQAT+GDVN ++P + AKW AW
Sbjct: 1 MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVNTSRPGIFAQRDRAKWDAW 60
Query: 237 NGRKGISQDDAKKQYIENAEKLHSKYA 317
+G S+++A YI ++L + A
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQLQEEAA 87
>08_01_0417 -
3692247-3692329,3692442-3692504,3693233-3693350,
3694084-3694095
Length = 91
Score = 71.3 bits (167), Expect = 3e-13
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +3
Query: 63 MSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLV--ESAKWKAW 236
M L E F+Q A+K + S++ L LY LYKQAT+GDVN A+P + AKW AW
Sbjct: 1 MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTARPGIFAQRDRAKWDAW 60
Query: 237 NGRKGISQDDAKKQYIENAEKL 302
+G S+++A YI ++L
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQL 82
>06_01_0108 -
860080-860162,860276-860338,860857-860974,861481-861492
Length = 91
Score = 63.3 bits (147), Expect = 7e-11
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 63 MSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAW 236
M L E+F++ A+K + S+++ L LY LYKQAT+G V +P L + KW AW
Sbjct: 1 MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVTTGRPGIFNLKDRYKWDAW 60
Query: 237 NGRKGISQDDAKKQYIENAEKL 302
+G S+++A YI ++L
Sbjct: 61 KAVEGKSKEEAMADYITKVKQL 82
>03_06_0582 -
34891613-34891795,34892407-34892466,34893134-34893280,
34893502-34893657,34893745-34893828,34893907-34893995,
34894575-34894689,34894776-34894899,34895080-34895219,
34895868-34895929,34896042-34896108,34896185-34896295,
34896868-34896945,34897074-34897274,34897492-34897563,
34897630-34897693,34898084-34898154,34898328-34898474
Length = 656
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 129 DDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKKQYIENAEK 299
+D L LY LY+QAT+G N+ +P VE +KW +W+G + +A + +++ E+
Sbjct: 37 NDVALLLYGLYQQATVGPCNVPKPRAWNPVEQSKWTSWHGLGSMPSAEAMRLFVKILEE 95
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 117 TKPSDDENLALYSLYKQATIGDVNIAQPSG--LVESAKWKAWNGRKGISQDDAKKQYIEN 290
T + L LY LYK AT G QPS L AKW AW+ + ++A ++YI
Sbjct: 109 TSVPEQAQLQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITV 168
Query: 291 AEKLHSKYA 317
++L ++
Sbjct: 169 VDELFPNWS 177
>03_01_0463 +
3551764-3551897,3551989-3552046,3552148-3552255,
3552664-3552721,3552788-3553014,3553085-3553145,
3553311-3553615
Length = 316
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/93 (21%), Positives = 39/93 (41%)
Frame = +3
Query: 30 TLPPDLKR*HKMSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGL 209
T+ PD + DE + A++ + KP+ + +SLY AT ++ +
Sbjct: 189 TVFPDAEARLSQPKDETWSDCAEQ--GFAVKPTKGSAVLFFSLYPNATFDPGSLHGSCPV 246
Query: 210 VESAKWKAWNGRKGISQDDAKKQYIENAEKLHS 308
++ KW A S D+ ++ + E H+
Sbjct: 247 IQGEKWSATKWIHVRSYDENGRRSSDKCEDQHA 279
>04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455
Length = 300
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 4 TVPIGTLQLPYLLISKDNT-KCLSTSNSNRSPIRLGTGRPSP 126
++ L + +L+IS NT K L++ S+ SP +LG G P P
Sbjct: 114 SISASLLGIIFLIISLRNTNKGLTSLQSSSSPTKLGDGLPLP 155
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 247 LRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARFSSSLGLVFQFLTLSATCLNCSSR 68
LR + +A+ R L + + SP++ CL YS R L L L C+ C +
Sbjct: 230 LRELGLYCVAMEDRDLDFVLANSPVLECLGIYYSQRQIVLLRLASHSLRCVQICM-CIAE 288
Query: 67 DI 62
DI
Sbjct: 289 DI 290
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 164 LVQGVQRKVLIVTGLGLP---VPNLIGDLFEL 78
LV G R + ++ +GLP +PN+IGDLF L
Sbjct: 560 LVAGKCRYMSVLELIGLPKDNIPNVIGDLFNL 591
>07_01_0703 - 5295561-5297523,5299344-5299462
Length = 693
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 160 YREYSARFSSSLGLVFQFLTLSAT--CLNCSSRDILCYLLRSGGR 32
+RE A+ + +G + Q L+ C NCS +L L +S GR
Sbjct: 454 FREDDAQLAEEIGDLVQLRVLNVVLNCSNCSEAKVLTELAKSMGR 498
>05_02_0150 -
7111090-7111225,7111251-7111458,7111705-7111774,
7112290-7112367
Length = 163
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +1
Query: 181 MLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTH 318
M+ SP W AP G G +A+ P+ S NTH
Sbjct: 35 MVINSSPKHTWFAPVGNKGALARIQPQVTELEGKVTSLSTSMENTH 80
>08_02_0818 -
21524539-21524664,21524911-21524961,21525800-21526170,
21526497-21526852,21527926-21527996
Length = 324
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +3
Query: 90 VADKVRNWKTKP----SDDENLALYSLYKQAT 173
V D++ W P +D+EN + +LYK+AT
Sbjct: 241 VKDRIEEWYRPPWDRTADEENASFNALYKEAT 272
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 27.1 bits (57), Expect = 5.8
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 326 NNLCVFGVEFLRIFDVLLLGIVLGDAFATVP-CLPLGALHKTAGLGNVNITYGSLLVQGV 150
NN C F + L++F L L +FA C LG +T L +V G+ L G
Sbjct: 76 NNYCKFDDQRLQLFTSSLYLAALAASFAASRLCTRLGR-RRTMQLASVFFLGGTALCAGA 134
Query: 149 QRKVLIVTG 123
+++ G
Sbjct: 135 ANLAMLIVG 143
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +1
Query: 190 LPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLRIK*ISYLNYALS 369
+P PA PSG H + SP P S + KL ++ + + N L+
Sbjct: 5 IPPPAFFQFLPSGAHSSPHHQSPLRSPASERERYLAELLAERQKLAPFMQVLPFCNRLLN 64
Query: 370 HDFL 381
+ L
Sbjct: 65 QEIL 68
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 132 DENLALYSLYKQATIGDVNIAQPSGLVES 218
DE+ AL +L+ A + VNI QPS +VES
Sbjct: 476 DESSALDALHTLADLS-VNILQPSSIVES 503
>02_01_0365 +
2621302-2621711,2622442-2622620,2623381-2623496,
2623626-2623964,2624113-2624307,2624505-2624594,
2625288-2625518,2625632-2625952
Length = 626
Score = 27.1 bits (57), Expect = 5.8
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +3
Query: 105 RNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKAWNGRKGISQDDAK-KQY 281
R K K +DE+ + + K+A + I Q L+++ WNG S++ K ++
Sbjct: 90 RKHKQKRKNDESDEVSRMEKRARYLLIKIKQEQNLLDAYSGDGWNGH---SREKIKPEKE 146
Query: 282 IENAEKLHSKYA*IIT*N*INFLLKLCSFS 371
++ A+K KY I + L LCS S
Sbjct: 147 LQRAKKQIMKYK--IAIRDVIHQLDLCSSS 174
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 111 WKTKPSDDENLALYSLYKQATIGDVNIAQ 197
WK S ++NLA +++Y T V++ Q
Sbjct: 138 WKVSRSSEQNLAFFAVYNMETTDIVSLYQ 166
>12_02_0691 - 22195142-22196197
Length = 351
Score = 26.6 bits (56), Expect = 7.7
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = -3
Query: 241 PFHAFHLALSTRPLGWAMLTSPMVACLYREYSARFSSSLG---LVFQFLTLSATCLNCSS 71
PF + LA P G PM+AC +A ++ L L + L A N S+
Sbjct: 57 PFSVYALAFLRAPRGLHQTPYPMLACAVAAPAALLAAVLAVPVLAADDVAL-AWAANASA 115
Query: 70 RDILCYLLRSGGRVVARFQLV 8
L + L +GG F V
Sbjct: 116 AAALWWCLTNGGYTAVAFSRV 136
>03_06_0051 +
31290431-31290610,31290727-31290849,31291771-31291928,
31292395-31292497,31293077-31293172,31293367-31293432,
31293500-31293619,31293905-31293991
Length = 310
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 96 DKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKA 233
+K K KP + L YSL TI ++ +++ KW A
Sbjct: 254 EKCIGLKVKPRKGDGLLFYSLMVNGTIDPTSLHGSCPVIKGEKWVA 299
>01_07_0064 +
40834649-40834786,40834934-40834997,40835333-40835391,
40835602-40835677,40835775-40835846,40837641-40837728,
40838239-40838497,40838766-40839000,40839447-40839470,
40839910-40839997,40840110-40840300,40841082-40841322,
40841803-40842556
Length = 762
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +3
Query: 33 LPPDLKR*HKMSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGL 209
L P + K D FK+ D+V +W T D+ N+A Y + + P G+
Sbjct: 161 LSPRILEDFKAYADVCFKEFGDRVAHWIT--IDEPNVASIGSYDSGQLAPGRCSDPFGI 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,044,320
Number of Sequences: 37544
Number of extensions: 272188
Number of successful extensions: 913
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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