Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c19r
         (752 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O17660 Cluster: Putative uncharacterized protein srw-24...    33   5.7  
UniRef50_A0E4L4 Cluster: Chromosome undetermined scaffold_78, wh...    33   7.6  

>UniRef50_O17660 Cluster: Putative uncharacterized protein srw-24;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein srw-24 - Caenorhabditis elegans
          Length = 390

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +1

Query: 319 ATLDFSINFFTNFVT--LCLVKIILNPVNSYREKV*FIFIRLLMCVSD*LNFS 471
           A LDF  N FT  V   LCL+ +++    S R+   F+F+ + +C+SD LNFS
Sbjct: 46  AILDF--NIFTEIVAIVLCLLHLMILFRKSLRKNGVFVFM-IAICISDILNFS 95


>UniRef50_A0E4L4 Cluster: Chromosome undetermined scaffold_78, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_78,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 329

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 20/85 (23%), Positives = 39/85 (45%)
 Frame = -3

Query: 360 NKVRKEINRKVKCRLALPVVVFKLMRHRIQTKFNLEAYPFIVSFHIRIEFYSYSLKQIQY 181
           NK+     +   C L L ++ +KL++ R     NL  + ++++ H  ++   Y     +Y
Sbjct: 108 NKINTNFGQMQNCVLHLRIINYKLLQLRFSFVSNLNFFLYLLTQHYFLQLKIYIAINFRY 167

Query: 180 FIILSFN**FFYSMWFCFSMLMLIF 106
           F I      FF+     FS++  +F
Sbjct: 168 FYISEC---FFFEQ-LHFSLISFLF 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,833,544
Number of Sequences: 1657284
Number of extensions: 8143702
Number of successful extensions: 16353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16342
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)