Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c19r
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AC024831-8|AAK72079.3|  362|Caenorhabditis elegans Serpentine re...    29   2.7  
Z81542-5|CAB04420.2|  433|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    29   4.7  
Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC024831-6|AAY86308.1|  351|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z82059-4|CAB04877.1|  314|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical
           protein C41G6.7 protein.
          Length = 390

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +1

Query: 319 ATLDFSINFFTNFVT--LCLVKIILNPVNSYREKV*FIFIRLLMCVSD*LNFS 471
           A LDF  N FT  V   LCL+ +++    S R+   F+F+ + +C+SD LNFS
Sbjct: 46  AILDF--NIFTEIVAIVLCLLHLMILFRKSLRKNGVFVFM-IAICISDILNFS 95


>AC024831-8|AAK72079.3|  362|Caenorhabditis elegans Serpentine
           receptor, class t protein24 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 354 LCYIVFSQNYFKSSEQLSREGLVYFYQTVNVC 449
           LC I+F+++ F  SE +S+     F+Q+V +C
Sbjct: 232 LCVILFAKSRFIRSESMSKTQKQIFFQSVLIC 263


>Z81542-5|CAB04420.2|  433|Caenorhabditis elegans Hypothetical
           protein F49A5.8 protein.
          Length = 433

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 358 VTLCLVKIILNPVNSYREKV*FIFIRLLMCVSD*LNFS 471
           + LCLV +++    S R    ++F+ + +CVSD LNFS
Sbjct: 88  IILCLVHLMILLRKSLRTSGVYVFM-IAICVSDILNFS 124


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 429 KNKLDLLSIAVHWI*NNFD*TQCNKVRKEINRKVKCRLALPV 304
           KNK  L+  A+  +  NFD T   KV +++ + V     LP+
Sbjct: 444 KNKAKLIEKALEMLLENFDDTDYKKVERDVEKVVNETRDLPI 485


>Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical
           protein R11H6.4 protein.
          Length = 230

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 250 ISFYSVVSYPHRILFLLS*TNT 185
           I FY  V++PHR  F LS  NT
Sbjct: 58  ILFYQSVTHPHRFFFFLSSPNT 79


>AC024831-6|AAY86308.1|  351|Caenorhabditis elegans Hypothetical
           protein Y55F3C.10 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 354 LCYIVFSQNYFKSSEQLSREGLVYFYQTVNVC 449
           LC I+F+++    SE +SR     F+Q+V +C
Sbjct: 222 LCVILFAKSKHFRSESISRTQTQIFFQSVLIC 253


>Z82059-4|CAB04877.1|  314|Caenorhabditis elegans Hypothetical
           protein T27E9.8 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 151 KLLIKT*NYKILYLFKRVGIKFYADMKRHYKR 246
           KLL+K+ N  + Y+F R+G     ++ RH +R
Sbjct: 37  KLLVKSLNVTLSYIFVRMGAGIRIEIVRHDRR 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,574,695
Number of Sequences: 27780
Number of extensions: 206491
Number of successful extensions: 433
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)