Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c19r
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   0.76 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   0.76 
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    25   0.76 
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    25   0.76 
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    25   0.76 
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    25   0.76 
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    25   0.76 
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    25   0.76 
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    25   0.76 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.76 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.8  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  FKYINYFHFNQNYN 5
           +KY NY ++N NYN
Sbjct: 89  YKYSNYNNYNNNYN 102


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  FKYINYFHFNQNYN 5
           +KY NY ++N NYN
Sbjct: 89  YKYSNYNNYNNNYN 102


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  FKYINYFHFNQNYN 5
           +KY NY ++N NYN
Sbjct: 89  YKYSNYNNYNNNYN 102


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  FKYINYFHFNQNYN 5
           +KY NY ++N NYN
Sbjct: 89  YKYSNYNNYNNNYN 102


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  FKYINYFHFNQNYN 5
           +KY NY ++N NYN
Sbjct: 89  YKYSNYNNYNNNYN 102


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  FKYINYFHFNQNYN 5
           +KY NY ++N NYN
Sbjct: 89  YKYSNYNNYNNNYN 102


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  FKYINYFHFNQNYN 5
           +KY NY ++N NYN
Sbjct: 89  YKYSNYNNYNNNYN 102


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  FKYINYFHFNQNYN 5
           +KY NY ++N NYN
Sbjct: 89  YKYSNYNNYNNNYN 102


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  FKYINYFHFNQNYN 5
           +KY NY ++N NYN
Sbjct: 89  YKYSNYNNYNNNYN 102


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  FKYINYFHFNQNYN 5
           +KY NY ++N NYN
Sbjct: 322 YKYSNYNNYNNNYN 335


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 261 NLEAYPFIVSF-HIRIEFYSYSLKQIQY 181
           NL+ +P      HI IE + Y+++ I+Y
Sbjct: 141 NLQYFPMDRQLCHIEIESFGYTMRDIRY 168


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 261 NLEAYPFIVSF-HIRIEFYSYSLKQIQY 181
           NL+ +P      HI IE + Y+++ I+Y
Sbjct: 141 NLQYFPMDRQLCHIEIESFGYTMRDIRY 168


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 261 NLEAYPFIVSF-HIRIEFYSYSLKQIQY 181
           NL+ +P      HI IE + Y+++ I+Y
Sbjct: 80  NLQYFPMDRQLCHIEIESFGYTMRDIRY 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,379
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)