Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c19f
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    43   4e-05
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   3.1  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   3.1  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   5.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   5.5  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   7.2  

>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 22/110 (20%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
 Frame = +2

Query: 254 QKKAGERHETMSNKDALMFPLVASCALFGLYIFFQFFSKEYINLLLTGYFFFLGVLALSH 433
           Q++  E  + ++ + A++FP+     L  +Y+  ++ SKEYI L+L GY     ++    
Sbjct: 23  QEEEPEEKQLINKRLAVLFPIFGGVTLVLMYLALRYLSKEYIQLILQGYASLASIICFVR 82

Query: 434 LLSPIISF-LVPASIPNIPFHIHFTRGERDNKQDIINYKFTSYDVICLLI 580
             +P  +F  + A++ +I   + + + +     +I+ +   +  +  + I
Sbjct: 83  SFNPKTTFGKITATMSSIAIALFYFKTKHWMASNILAWALAANSISIMRI 132



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 539 NYKFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIA 649
           N K T   +   + S+ +  +Y   KHW+A+N+   A
Sbjct: 85  NPKTTFGKITATMSSIAIALFYFKTKHWMASNILAWA 121


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 7/23 (30%), Positives = 18/23 (78%)
 Frame = +2

Query: 485 PFHIHFTRGERDNKQDIINYKFT 553
           PF+IH++R +R+  ++I+  +++
Sbjct: 928 PFNIHYSRNQREEAENILRRRYS 950


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 6   KTIRRGKLS*KLYFCIIFYKKWQIWPQKY 92
           K + R K S +L FCI+F+K W+    +Y
Sbjct: 64  KELARFK-SARLNFCIVFFKNWEALYSQY 91


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 155 SIEGIAIAYLSLVIMAILPIFFGSFRS 235
           +I+GI I Y  ++ + I  IFFG F S
Sbjct: 403 TIDGIYIIYFDMLALIIPTIFFGFFGS 429



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 144 FSVTF-CIVSLTLSSMFIGISEAISAISYRK*CRNTIFKTTFPYG 13
           F V F C +  T+ S F        AI Y K CR  +F   +P+G
Sbjct: 210 FLVIFICYIFFTVLSFF----NVPDAIVYSKLCRGLMFYLLYPFG 250


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 80  ASEIPINIEDSVKETIQNVTEKPPSSIEGIAIAYLSLV 193
           A  + I  ++ + E ++   E+PPS +  I +  LSL+
Sbjct: 79  AFRLQIASKEFLNELVRRFPERPPSRLNKIQVMILSLI 116


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 374 TPLRRIGRKY-IVRKEHMMQPTGTSEHLCWTLFHDA 270
           T  +  G  Y ++ K  ++ P    + LCWT+ +DA
Sbjct: 591 TQCKSCGPSYRLLPKIELLLPCSGRDDLCWTILNDA 626


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 68  MADMASEIPINIEDSVKETIQNVTEKPPSSIEGIAIAYLS 187
           +   ++ IP  I+DS K T+   TE+   S++    ++ +
Sbjct: 126 LEQQSNNIPTGIQDSSKYTVNGPTERDNKSMKSFVRSFFT 165


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 622 PVLFKQVPSSKTERDEQTNHIIGCELVIDDILFVVSLTTG 503
           P L + VP  +   +E+   ++   +  DDI  VVS  TG
Sbjct: 440 PELERSVPKEEKTLEEKKPSMVHDSVTSDDIAVVVSRATG 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,377
Number of Sequences: 5004
Number of extensions: 57067
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)