Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c19f
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90... 91 7e-19
05_04_0436 + 21226656-21226695,21226819-21226934,21227059-212272... 90 1e-18
10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601 46 3e-05
02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719... 41 7e-04
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080... 31 1.1
08_02_0213 + 14349821-14350396,14351360-14351610,14351695-143520... 29 4.3
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135... 28 5.6
06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649... 28 7.5
>02_01_0124 +
901034-901153,901455-901481,901713-901792,903739-903811,
904015-904072,904561-904615,905140-905164,905361-905421,
907416-907531,907661-907812,907918-908003,908182-908309,
908451-908501,908774-908860,908964-909033,909351-909407,
909729-909865,910313-910390,910971-911057
Length = 515
Score = 91.1 bits (216), Expect = 7e-19
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%)
Frame = +2
Query: 182 LSLVIMAILPIFFGSFRSVKYLNEQKKAGERHETMSNKDALMFPLVASCALFGLYIFFQF 361
+++++ A L ++ G +RSVK ETMS + A+ FPLV S L L++ F+F
Sbjct: 181 VNVILTACLAVYVGCYRSVKPTPPS-------ETMSKEHAMRFPLVGSAMLLSLFLLFKF 233
Query: 362 FSKEYINLLLTGYFFFLGVLALSHLLSPIISFLVPASIPN--IPFHIHFTRGERDNKQDI 535
SK+ +N +LT YFF LG+ AL L P I +P + I + F
Sbjct: 234 LSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLPKEWNDNAIVWCAPFFHS-------- 285
Query: 536 INYKFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAF 652
++ +FT V+ + WY KKHW+ANN+ GI+F
Sbjct: 286 LSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISF 324
>05_04_0436 +
21226656-21226695,21226819-21226934,21227059-21227210,
21227309-21227394,21227999-21228126,21228267-21228317,
21228574-21228660,21229418-21229487,21230334-21230470,
21230855-21230932,21231912-21231998
Length = 343
Score = 90.2 bits (214), Expect = 1e-18
Identities = 53/156 (33%), Positives = 81/156 (51%)
Frame = +2
Query: 185 SLVIMAILPIFFGSFRSVKYLNEQKKAGERHETMSNKDALMFPLVASCALFGLYIFFQFF 364
++++ A L ++ G +RSVK ETMS + A+ FPLV S L L++ F+F
Sbjct: 29 NVILTACLAVYVGCYRSVKPTPPA-------ETMSKEHAMRFPLVGSAMLLSLFLLFKFL 81
Query: 365 SKEYINLLLTGYFFFLGVLALSHLLSPIISFLVPASIPNIPFHIHFTRGERDNKQDIINY 544
SK+ +N +LT YFF LG+ AL L P I +P + + R + ++
Sbjct: 82 SKDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND---NAIVWRAPLFHS---LSV 135
Query: 545 KFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAF 652
+FT V+ + WY KKHW+ANN+ GI+F
Sbjct: 136 EFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISF 171
>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
Length = 371
Score = 46.0 bits (104), Expect = 3e-05
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Frame = +2
Query: 176 AYLSLVIMAILPIFFGSFRSVKYLNEQKKA---GERHETMSNKDALMFPLVASCALFGLY 346
A L+L++ A+ + + R++ + E ++ E T+ ALM PL +SC+L L
Sbjct: 14 ASLALILTAVSVAYASASRALDHGREMERNLDFSEASITLDRSQALMIPLASSCSL--LL 71
Query: 347 IFFQFFSKEYINLLLTGYFFFLGVLALSHLLSPIISFLVPASIPNIPFHIHFTRGERDNK 526
+F+ F S ++ L+T + +AL LSP ++ + PF
Sbjct: 72 MFYLFSS---VSHLVTAFTAVASAMALFFCLSPYVNCVRSRLGVGDPF-----------V 117
Query: 527 QDIINYKFTSYDVICLLISLCLG---AWYLLKKHWIANNLFGIA 649
+ FT LL+++C+G AW L+ HW+ NNL GI+
Sbjct: 118 SRCCSKPFTRLQ--GLLVAICVGTVVAW-LVSGHWLLNNLLGIS 158
>02_05_1289 -
35470076-35470243,35471032-35471108,35471935-35471971,
35472559-35472618,35472693-35472769,35473244-35473364,
35473505-35473597,35473708-35473770,35475195-35475245,
35475384-35475511,35476249-35476343,35476345-35476427,
35476653-35476808,35477046-35477182,35477243-35477252,
35477291-35477380,35477771-35478070,35479054-35479120,
35479382-35479469,35480317-35480373,35480469-35480592
Length = 693
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 536 INYKFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAF 652
++ +FT V+ + WY KKHW+ANN+ GIAF
Sbjct: 404 LSVEFTKSQVVTSIPGFFFCIWYSAKKHWLANNVLGIAF 442
>11_06_0109 +
20202629-20205452,20206354-20206578,20207208-20208091,
20208692-20208814
Length = 1351
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 110 SVKETIQNVTEKPPSSIEGIAIAYLSLVIMAILPIFFGSFRSVKYLN 250
++ E I N+ + P S ++ + + Y + I ILPI G F S+ YL+
Sbjct: 356 NITELIDNLAKCPASKLQQLILKYNN--ITGILPISMGVFSSLVYLD 400
>08_02_0213 +
14349821-14350396,14351360-14351610,14351695-14352070,
14352210-14352341,14352425-14352600,14353176-14353299
Length = 544
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 50 HYFL*E-MADMASEIPINIEDSVKETIQNVTEKPPSSIE 163
+YF E + D+ ++I N+ V +Q++T+KPP+++E
Sbjct: 505 YYFEREFLVDVVNKICNNVR-GVNRVVQDITQKPPATVE 542
>05_07_0278 +
28911722-28911934,28912154-28913055,28913142-28913581,
28913628-28913955,28914101-28914743
Length = 841
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 324 DATNGNIRASLLDIVS*RSPAFFCSFRYFTDRNEPKN 214
DA G +R +L +V SP+F C+F + D E +N
Sbjct: 20 DAEMGAMRTMILKVVKDMSPSFCCNFIPWQDLVEVEN 56
>06_03_0577 +
22461831-22462023,22462378-22463160,22463380-22464936,
22465082-22465449
Length = 966
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 194 IMAILPIFFGSFRSVKYLN--EQKKAGERHETMSNKDALMFPLVASCALFG 340
I I+P+F GSF + YLN GE + ++A F +V + L G
Sbjct: 526 ISGIIPVFLGSFIGLTYLNLSFNNLIGEVPDDGIFRNATAFSIVGNVGLCG 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,021
Number of Sequences: 37544
Number of extensions: 316704
Number of successful extensions: 791
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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