Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c19f
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)                 56   2e-08
SB_51977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_8687| Best HMM Match : RCSD (HMM E-Value=0.25)                      28   5.8  
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)                 28   7.6  
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            28   7.6  
SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_523| Best HMM Match : zf-C2H2 (HMM E-Value=4.9)                     28   7.6  
SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
          Length = 343

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%)
 Frame = +2

Query: 101 IEDSVKETIQNVTEKPPSSIEGIAIAYLSLVIMAILPIFFGSFRSVKYLNEQK 259
           IE +  ET +N T +  ++ EG+  AY  L++MA+LPIF+GSFRSV  + EQK
Sbjct: 291 IEAAANETAKNATGRAAATPEGMLTAYTGLIVMALLPIFYGSFRSVHAVLEQK 343


>SB_51977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +2

Query: 446 IISFLVPASIPNIPFHIHFTRGERDNKQDIINYKFTSYDVICLLISLCLGAWYLLKKHWI 625
           II+F++ A    + F + FT+ ER    D+      + D+  + ISL +  + L      
Sbjct: 30  IITFVLGAVGNFLVFGVIFTKKERKTPNDVFLINLATADLTAVSISLPVKLYQLFPPFLP 89

Query: 626 ANN 634
           ANN
Sbjct: 90  ANN 92


>SB_8687| Best HMM Match : RCSD (HMM E-Value=0.25)
          Length = 476

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +2

Query: 242 YLNEQKKAGERHETMSNKDALMFPLVASCALFGLYIFFQFFSKEYINLLLTGYFFFLGV 418
           YLN Q  A    E    + A   P+VAS +LF ++  F+ F+  Y  L +   F  +GV
Sbjct: 77  YLNYQNAARALFEAYIKRSARCMPVVASDSLF-IWCEFRGFAMNYKALFVV--FLVIGV 132


>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
          Length = 1127

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 299 ALMFPLVASCALFGLYIFFQFFSK 370
           ALM+P V    L G+YIF  F  K
Sbjct: 360 ALMYPFVVMTTLQGVYIFLAFICK 383


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 447  SSRSWYQLRYQTFRSIFISPVVRETTNRISSITSSHPMM*FVCS 578
            +SR+  +   Q    +F  P V+E  NR+ S +   P+  FVCS
Sbjct: 964  ASRNHVRDHVQPEDEVFSKPRVKEGKNRVKSPSGYSPVDMFVCS 1007


>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1346

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +2

Query: 140 EKPPSSIEGIAIA----YLSLVIMAILPIFFGSFRSVKYLNEQKKAGERHETMSNKDALM 307
           +K PSS  G   A    ++ LVI+A+L     S  SVK LNEQ+   +  +  S   +L 
Sbjct: 184 DKVPSSKIGRTFAILWFFVGLVIVAMLVGSITSSLSVKILNEQQNVKQERKMASLDSSLE 243

Query: 308 FPLV 319
           + ++
Sbjct: 244 YKVL 247


>SB_523| Best HMM Match : zf-C2H2 (HMM E-Value=4.9)
          Length = 149

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 447 SSRSWYQLRYQTFRSIFISPVVRETTNRISSITSSHPMM*FVCS 578
           +SR+  +   Q    +F  P V+E  NR+ S +   P+  FVCS
Sbjct: 79  ASRNHVRDHVQPEDEVFSKPRVKEGKNRVKSPSGYSPVDMFVCS 122


>SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 447 SSRSWYQLRYQTFRSIFISPVVRETTNRISSITSSHPMM*FVCS 578
           +SR+  +   Q    +F  P V+E  NR+ S +   P+  FVCS
Sbjct: 159 ASRNHVRDHVQPEDEVFSKPRVKEGKNRVKSPSGYSPVDMFVCS 202


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 244  SKRAKESRRAS*NNVQQRCSDVPVGCIMCSF 336
            +K+  + +R S   VQ+R   VP  C+ C+F
Sbjct: 983  AKKPSKRKRPSLKTVQKRPKTVPWSCVACTF 1013


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,542,723
Number of Sequences: 59808
Number of extensions: 401859
Number of successful extensions: 908
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)