Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c19f
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical pr... 48 4e-06
U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm recep... 29 0.090
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 32 0.31
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 32 0.31
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 32 0.31
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 32 0.31
AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen prot... 28 6.7
Z82058-1|CAB04862.2| 352|Caenorhabditis elegans Hypothetical pr... 27 8.8
U23523-1|AAC46560.2| 305|Caenorhabditis elegans Hypothetical pr... 27 8.8
AL023830-2|CAA19473.1| 413|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical
protein T05E11.5 protein.
Length = 468
Score = 48.4 bits (110), Expect = 4e-06
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Frame = +2
Query: 68 MADMASEIPINIEDSVKETIQNVTEKPPSSIEGIAIAYLSLVIMAILPIFFGSFRSVKYL 247
MA+ A+EIP T NVT + E A + L+L M+IL I GS RS +Y+
Sbjct: 1 MAEAATEIP--------PTASNVTV---FTFEEQATSSLALYGMSILCIIIGSIRSAQYI 49
Query: 248 N---EQKKAGERHETMSNKDALMFPLVASCALFGLYIFFQFFSKEYI 379
++K+ E TM ++A FP+ AS LFGLY+FF+ ++ ++
Sbjct: 50 RTNIDKKRLIEGSITM--REARKFPISASLVLFGLYLFFKPAAERFL 94
Score = 45.6 bits (103), Expect = 3e-05
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 19/108 (17%)
Frame = +2
Query: 386 LLTGYFFFLGVLALSHLLSPIISF------LVPASIP-NIPFHIHFTRGERDNKQ-DIIN 541
LLT F GV A + LL P ++ LVP+ + N P+ +G ++ ++ DI +
Sbjct: 172 LLTFLICFEGVNAFASLLKPFVTAFLKKMPLVPSFLRFNAPYLFSLKKGNKEMEEGDIED 231
Query: 542 YK-----------FTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAF 652
K F YD+I LL+ + +LLK+HWI NN+ G++F
Sbjct: 232 AKKKETEYLFKIDFDRYDIIALLMCSPILISHLLKRHWITNNIIGVSF 279
>U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm receptor
protein 139 protein.
Length = 346
Score = 28.7 bits (61), Expect(2) = 0.090
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 347 IFFQFFSKEYINLLLTGYFFFLGVLALSHLLSPIISFLVP-ASIPNI 484
+F FF KE+ N +L F V+ L HL P S + AS+ N+
Sbjct: 297 VFAIFFVKEFRNFVLCKKHFVANVIPLQHLPVPRNSLMTAHASLQNL 343
Score = 24.2 bits (50), Expect(2) = 0.090
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 167 IAIAYLSLVIMAILPIFFGSFRSVKYLNEQKKAGERHETMSNKDALMFPLVASCALFGLY 346
IA+ +L+++ A L I+F + ++E+ K R M+ +FP + G
Sbjct: 209 IALCFLTIIFCA-LKIYFKLKEDIHSMSERTKELNRQLMMTLTFQTIFPFFTMYSTVGAI 267
Query: 347 IFFQFFSKE 373
+ F E
Sbjct: 268 LTLPIFEIE 276
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 32.3 bits (70), Expect = 0.31
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +2
Query: 65 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 223
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 224 SFRSVKYLNEQKKAGERHETMSNKDALMFPLVA 322
F +K L+ + A + +++S+K + + ++A
Sbjct: 2651 KFEELKKLSSARSA--KVDSVSDKVSQIKEMIA 2681
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 32.3 bits (70), Expect = 0.31
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +2
Query: 65 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 223
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 224 SFRSVKYLNEQKKAGERHETMSNKDALMFPLVA 322
F +K L+ + A + +++S+K + + ++A
Sbjct: 2651 KFEELKKLSSARSA--KVDSVSDKVSQIKEMIA 2681
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 32.3 bits (70), Expect = 0.31
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +2
Query: 65 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 223
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 405 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 464
Query: 224 SFRSVKYLNEQKKAGERHETMSNKDALMFPLVA 322
F +K L+ + A + +++S+K + + ++A
Sbjct: 465 KFEELKKLSSARSA--KVDSVSDKVSQIKEMIA 495
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 32.3 bits (70), Expect = 0.31
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +2
Query: 65 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 223
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 224 SFRSVKYLNEQKKAGERHETMSNKDALMFPLVA 322
F +K L+ + A + +++S+K + + ++A
Sbjct: 2651 KFEELKKLSSARSA--KVDSVSDKVSQIKEMIA 2681
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 32.3 bits (70), Expect = 0.31
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +2
Query: 65 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 223
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 224 SFRSVKYLNEQKKAGERHETMSNKDALMFPLVA 322
F +K L+ + A + +++S+K + + ++A
Sbjct: 2651 KFEELKKLSSARSA--KVDSVSDKVSQIKEMIA 2681
>AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen protein
165 protein.
Length = 335
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 622 PVLFKQVPSSKTERDEQTNHIIGCELVIDDILFVVSLTTGEMNMERNVWYRSW 464
PVLF V S + E D +TN C++ D+L + T G+ ++R + W
Sbjct: 35 PVLFTSVQSLQQEIDFETNF---CKMRSRDMLVNLYQTGGQNRVKRGWLFGQW 84
>Z82058-1|CAB04862.2| 352|Caenorhabditis elegans Hypothetical
protein T27C5.1 protein.
Length = 352
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 170 AIAYLSLVIMAI-LPIFFGSFRSVKYLNE-QKKAGERHETMSNKDALMFPLVASCALFGL 343
+I+Y S VI + LP +F + Y K + +++ ++F V C L L
Sbjct: 28 SISYSSRVIQLVALPFQILAFYVILYKTPIAMKISKTPLLINHSSCVIFDFVL-CTLCTL 86
Query: 344 YIFFQFFSKEYINLL 388
Y+FF ++ +I +L
Sbjct: 87 YVFFPMYAFSFIGVL 101
>U23523-1|AAC46560.2| 305|Caenorhabditis elegans Hypothetical
protein F53A9.5 protein.
Length = 305
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 222 PKNIGKIAIITKLKYAIAIPSI-LEGGFSVTFCIVSLTLSSMFIGISEAISAIS 64
P N ++ I+ Y +AIP+I + G + CIV T M ++ ++ +S
Sbjct: 33 PTNFAEVDYISTYIYLLAIPTICVLGAGAAVMCIVVFTRKQMRSSLNVYLAGLS 86
>AL023830-2|CAA19473.1| 413|Caenorhabditis elegans Hypothetical
protein Y26E6A.2 protein.
Length = 413
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = -3
Query: 550 ELVIDDILFVVSLTTGEMNMERNVWYRSWYQERDDRTKQMTQC*NSKE 407
++V+ D++ ++ ++GEMN+ W Q+ ++ +C N E
Sbjct: 179 KMVLPDVILILDFSSGEMNVR---WILEKNQQENESDPDSEKCLNQSE 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,926,521
Number of Sequences: 27780
Number of extensions: 306437
Number of successful extensions: 981
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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