Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c19f
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.48 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.9  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 255 CSFRYFTDRNEPKNIGKIAIITKLKYAIAIPSIL 154
           CSF Y TD NE     +I + T   ++  IP IL
Sbjct: 197 CSFDYLTDTNEI----RIFVATIFTFSYCIPMIL 226


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 172 DCIFKFSDNGYFTY 213
           DCIF  S+ GYF Y
Sbjct: 69  DCIFVTSEPGYFLY 82


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 204 IAIITKLKYAIAIPSILEGGFSVTFCIVSLTLSS---MFIGISEAISAISY 61
           IAI+  + Y I +  I EGG  V   + S  +S    +F+   E I AIS+
Sbjct: 419 IAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECI-AISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 204 IAIITKLKYAIAIPSILEGGFSVTFCIVSLTLSS---MFIGISEAISAISY 61
           IAI+  + Y I +  I EGG  V   + S  +S    +F+   E I AIS+
Sbjct: 472 IAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECI-AISW 521


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 155 SIEGIAIAYLSLVIMAILPIFFGSFRS 235
           ++ GIA+ +L   +++ +PI  G  R+
Sbjct: 142 AVAGIAVVWLLAGLISFVPISLGLHRA 168


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 117 LTLSSMFIGISEAISAISYRK 55
           LTL +MF G+   I  ++Y K
Sbjct: 240 LTLVTMFTGLKSDIPPVAYVK 260


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 139 SYILYSFLNTI 107
           +Y L+SFLNTI
Sbjct: 147 AYCLFSFLNTI 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,637
Number of Sequences: 438
Number of extensions: 4206
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)