Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c17r
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 107 1e-23
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 2e-19
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 84 1e-16
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064) 62 6e-10
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07) 51 8e-07
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38) 30 0.44
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31) 28 6.7
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9) 28 8.9
SB_32734| Best HMM Match : Keratin_B2 (HMM E-Value=0.14) 28 8.9
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 107 bits (256), Expect = 1e-23
Identities = 71/198 (35%), Positives = 102/198 (51%), Gaps = 19/198 (9%)
Frame = -1
Query: 707 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLK----LPLNKVHI 540
+K+ L GD+NVI+VDW + ++ AV VG+ A L+ L+ L VH+
Sbjct: 134 MKNELLWEGDFNVIIVDWMRGAWFPFTRAVANTRLVGAQTARLLQILEERSGRKLAYVHV 193
Query: 539 VGFNLGAHVAGVTGRNLEGK---VARITGLDLSARDW---ENNVLRLGTNDAQYVEVIHT 378
+GF+ GAHVAG GR ++ + + RIT LD +A W + +RL T+DA +V+VIHT
Sbjct: 194 IGFSFGAHVAGYVGRRMKKRGRMIDRITALDPAAM-WFHKHHEDVRLDTSDALFVDVIHT 252
Query: 377 DGSGVNKNGLGVAIGHIDFFVNGRLVQPGCTN--------NLCSHNRAYEVFAATI-THG 225
G+ IGH DF+ NG QPGC N C H RA +F ++ T
Sbjct: 253 SAD----YGITSTIGHADFYPNGGKKQPGCDNFFRGFSSYLFCGHKRAPALFTTSLYTKT 308
Query: 224 KHYGNQCSTEAEITANNC 171
Y C +E + + NC
Sbjct: 309 PLYSYPCRSEDDFNSGNC 326
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 93.5 bits (222), Expect = 2e-19
Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Frame = -1
Query: 707 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKV----HI 540
++ A + D NVI DWS + Y A VG+ I +K L ++
Sbjct: 632 IRHALIKQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFLNNQTGNTPASFYL 691
Query: 539 VGFNLGAHVAGVTGRNLEG---KVARITGLDLSARDWEN-NV-LRLGTNDAQYVEVIHTD 375
VGF+LGAH++G GR + K+ RITGLD ++ + N +V +RL +DA +V+V+HTD
Sbjct: 692 VGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVDVMHTD 751
Query: 374 GSGVNKNGLGVAIGHIDFFVNGRLVQPGCTNNL--------CSHNRAYEVFAATIT 231
++ G GHIDF+ NG QPGC + L C H RA E +A ++T
Sbjct: 752 ---MDLAGTPTVSGHIDFYPNGGKKQPGCRDLLDGPINYVICDHMRAPEYYAESVT 804
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 84.2 bits (199), Expect = 1e-16
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 10/151 (6%)
Frame = -1
Query: 707 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN-LKLPLNK----VH 543
+KD L D NVI+VDW + Y AV VG+ +A F+K L L ++ H
Sbjct: 115 MKDELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTILSLSGSREGGAFH 174
Query: 542 IVGFNLGAHVAGVTGRNLE--GK-VARITGLDLSARDWENNV--LRLGTNDAQYVEVIHT 378
+GF+LGAH++G G+ L+ G+ + RITGLD + ++ +RL DAQ+V+VIHT
Sbjct: 175 SIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPATLMFKGEAPDVRLDRLDAQFVDVIHT 234
Query: 377 DGSGVNKNGLGVAIGHIDFFVNGRLVQPGCT 285
G+ GH+DF+ NG Q GC+
Sbjct: 235 S----YVFGITAPHGHMDFYPNGGTSQRGCS 261
>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
Length = 131
Score = 61.7 bits (143), Expect = 6e-10
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Frame = -1
Query: 710 IVKDAFLTSGDYNVIVVDWSSFS--LSTYSTAVMAVTGVGSSIATFLKNLK----LPLNK 549
+++D L NVI VDW S + L+ Y A VG+ +A + ++ L +
Sbjct: 43 VMRDELLKREPMNVITVDWQSGADGLNLYHVAAGNTRVVGAQLAELITTIQRVFDFDLRR 102
Query: 548 VHIVGFNLGAHVAGVTGRNLEGKVARIT 465
VH++G +LGAHVAG G L GKV RIT
Sbjct: 103 VHLIGHSLGAHVAGYAGERLSGKVGRIT 130
>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
Length = 408
Score = 51.2 bits (117), Expect = 8e-07
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Frame = -1
Query: 425 LRLGTNDAQYVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQPGC-------TNNL-CS 270
+RL +DA++V+V+HTD ++ G GHIDF+ NG QPGC +N L C
Sbjct: 16 VRLDPSDAEFVDVMHTD---MDFAGTSTQSGHIDFYPNGGKNQPGCRDIADGPSNALKCD 72
Query: 269 HNRAYEVFAATIT 231
H RA++ F +IT
Sbjct: 73 HVRAHDYFTESIT 85
>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
Length = 450
Score = 29.9 bits (64), Expect(2) = 0.44
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 292 PGWTRRPLTKKSMC-PIATPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAERSRP 465
P +P+ +C P+ +P P +++P P I + + VP+ TL QS A P
Sbjct: 193 PSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSPAPTSVPTPGTLNVQSPASILNP 251
Score = 21.0 bits (42), Expect(2) = 0.44
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 586 AILDPTPVTAITAVEYVDKLN 648
++ P P++A Y++KLN
Sbjct: 257 SVTSPAPLSAAEEQAYLEKLN 277
>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = -1
Query: 542 IVGFNLGAHVAGVTG---RNLEG-KVARITGLDLSARD 441
++GF+LG HVAG G +N G K+ RI+G ++ D
Sbjct: 21 VIGFSLGGHVAGYAGSRIKNTTGLKLGRISGKQIANLD 58
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Frame = -1
Query: 425 LRLGTNDAQYVEVIHTDGSGVNKNGLGVAI-GHID-FFVNGRLVQPGCTNNLCSHNRAYE 252
+ + +++ ++ + SG + + HID +NG +V PG + Y
Sbjct: 1 MSMSSDEVNFLVYRYLQESGFQHSAFTFGVESHIDQSSINGSVVPPGALVTILQKGVQYV 60
Query: 251 VFAATITHGKHYGNQCSTEAEITANN-CRG 165
AT+T G Y EAE T CRG
Sbjct: 61 EAEATVTEGVQY-----VEAEATVTEVCRG 85
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 326 DFFVNGRLVQPGCTNNLCSHNRAYEVFAATITHGKHYGNQCSTEA 192
D++ ++ G T+ C YE T GK YGN+C A
Sbjct: 1278 DYYAQCQVEDDGSTSCKCPIFCTYEYMPVCGTDGKTYGNKCEMRA 1322
>SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 707 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAV 618
+K+ L GD+NVI+VDW + ++ AV
Sbjct: 19 MKNELLWEGDFNVIIVDWMRGAWFPFTRAV 48
>SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -1
Query: 359 KNGLGVAIG---HIDFFVNGRLVQPGCTNNLCSHNRA 258
K+ G+ IG H+D VNG VQ C+HN+A
Sbjct: 12 KSSEGMYIGADLHLDKDVNGAYVQGSFIGGFCTHNKA 48
>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 590 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARI 468
+ +FL + + K H+ G ++G H+ GV +VA +
Sbjct: 120 LLSFLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASV 160
>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
Length = 778
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 16 VETNFIGHHRKLRFKFCRHHKWN 84
VE NF+GH R+ R CR K N
Sbjct: 233 VERNFVGHRRRCRRVVCRATKSN 255
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.3 bits (60), Expect = 6.7
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Frame = +1
Query: 310 PLTKKSMCPIATPKPFLLTPDPSV*ITSTY*ASFV-----PSRSTLFSQSRAERSRPVIL 474
PL + P+ P P + T P+V T T AS P S L A + P L
Sbjct: 913 PLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPPPPTSALPPPIPATQVPPPPL 972
Query: 475 ATLPSKFLPVTPAT*APRLKPTMC 546
LP PV T AP L P C
Sbjct: 973 PPLPPPPPPVQTTT-APTLPPASC 995
>SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9)
Length = 227
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -1
Query: 638 STYSTAVMAVTGVGSSIATFLKNLKLPLNKVH-IVGFNLGAHVAGVTGRNLEGKVARITG 462
S + ++ GVG S++ + PL V +VG + AGV R L KVA+
Sbjct: 56 SGIAAGALSSAGVGVSLSGIRVLIGGPLAGVAGLVGVGVVGAGAGVVSRGLTSKVAKHED 115
Query: 461 LDLSARDWENNVLRLGTND 405
+ A +N++ L D
Sbjct: 116 TMVLAESKKNSISELALQD 134
>SB_32734| Best HMM Match : Keratin_B2 (HMM E-Value=0.14)
Length = 308
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 542 IVGFNLGAHVAGVTGRNLEGKVARITGLDLSARDWE 435
IVG ++G + VT + +ARI G D+ +WE
Sbjct: 252 IVGCDVGQNECLVTSCATQSLIARIAGCDVRQDEWE 287
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,600,847
Number of Sequences: 59808
Number of extensions: 488133
Number of successful extensions: 1217
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -