Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c17r
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 33 0.15
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 33 0.19
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 33 0.19
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 31 1.0
At2g13560.1 68415.m01495 malate oxidoreductase, putative similar... 31 1.0
At4g17740.2 68417.m02649 C-terminal processing protease, putativ... 30 1.8
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai... 29 4.2
At3g49200.1 68416.m05377 hypothetical protein 28 7.3
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 28 7.3
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 28 7.3
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 28 7.3
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 28 7.3
At3g50750.1 68416.m05554 brassinosteroid signalling positive reg... 27 9.6
At3g49210.1 68416.m05378 expressed protein 27 9.6
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 27 9.6
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = -1
Query: 674 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 495
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 494 NLEGKVARITG 462
+ GK+ + G
Sbjct: 454 TISGKIGKEVG 464
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = -1
Query: 674 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 495
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 494 NLEGKVARITGLDLSAR 444
+ GK+ + +L A+
Sbjct: 454 TISGKIGKEILFELLAK 470
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = -1
Query: 674 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 495
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 494 NLEGKVARITGLDLSAR 444
+ GK+ + +L A+
Sbjct: 454 TISGKIGKEILFELLAK 470
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = -1
Query: 434 NNVLRLGTNDAQYVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQPGCTNNLCSHN--- 264
N + L N Q +EV+ + G L + H RL++ T+ LC N
Sbjct: 417 NTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLIS 476
Query: 263 -RAYEVFAATITHGKHYGNQCSTE 195
R V + G H +Q S+E
Sbjct: 477 ARLDAVSEISACMGSHSSSQLSSE 500
>At2g13560.1 68415.m01495 malate oxidoreductase, putative similar to
NAD-dependent malic enzyme 62 kDa isoform, mitochondrial
precursor (EC 1.1.1.39) (NAD-ME) (SP:P37221) {Solanum
tuberosum}
Length = 623
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = -1
Query: 509 GVTGRNLEGKVARITGLDLSARDWENNVLRLGTNDAQYVE-VIHTDGSGV------NKNG 351
G+ +N G R G+ SA D + + A+ V+ ++ TDGS + +G
Sbjct: 148 GLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVHG 207
Query: 350 LGVAIGHIDFFVNGRLVQP 294
+G+A+G +D +V + P
Sbjct: 208 IGIAVGKLDLYVAAAGINP 226
>At4g17740.2 68417.m02649 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 505
Score = 29.9 bits (64), Expect = 1.8
Identities = 27/108 (25%), Positives = 49/108 (45%)
Frame = +1
Query: 313 LTKKSMCPIATPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAERSRPVILATLPSK 492
L S+ PI+ KP + P+ S+ I+ S+ SRS + SR+ + P ++ ++
Sbjct: 4 LASSSLSPISFTKPNKINPNFSIQISKASKFSYARSRSNI---SRSNAANPGVVFVC-NR 59
Query: 493 FLPVTPAT*APRLKPTMCTLLSGNLRFFKKVAILDPTPVTAITAVEYV 636
FL V +L + S N R VA++ V ++++ V
Sbjct: 60 FLCVIERNDQRKLSGKVMMKSSVNFRQNLSVALVRIVSVLLVSSISVV 107
>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 1009
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 716 NPIVKDAFLTSGDYNVIVVDWSSFSL 639
NP + DAF+ +GDY+ +VV F L
Sbjct: 901 NPRIHDAFMGAGDYSGLVVPDGKFGL 926
>At3g49200.1 68416.m05377 hypothetical protein
Length = 507
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = -1
Query: 491 LEGKVARITG--LDLSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGVA 339
LE V+ +T LD S WE ++L L T+DA+ V V+ H+ G G++ L +A
Sbjct: 120 LESYVSDLTTIPLDTSKPLWEVHLLDLKTSDAENVAVLRIHHSLGDGMSMMSLVLA 175
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 358 LLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAERSRPVILATLPSKFLPVTPAT 516
L + P+ T+++ VP ST S S+ + + P +LPS PAT
Sbjct: 451 LASSTPATGSTNSFTGFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPAT 503
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 299 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 189
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 299 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 189
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 299 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 189
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At3g50750.1 68416.m05554 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 276
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 494 NLEGKVARITGLDLSARDWENNVLR-LGTNDAQYVEVIHTDGSG 366
NL GK G+D+S + WE + +G +D + +T G G
Sbjct: 233 NLVGKSVSSVGVDVSVKPWEGEKIHDVGIDDLELTLGHNTKGRG 276
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Frame = -1
Query: 491 LEGKVARITG--LDLSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGVA 339
LE V+ +T LD+S W+ ++L L T+DA+ V V+ H+ G G++ L +A
Sbjct: 122 LETYVSNLTTVPLDISKPLWQLHLLDLKTSDAENVAVLKFHHSLGDGMSLMALVLA 177
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 251 VFAATITHGKHYGNQCSTEAEI 186
+F TI YG++C+TEAEI
Sbjct: 1111 LFGTTIYENIAYGHECATEAEI 1132
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,108
Number of Sequences: 28952
Number of extensions: 328341
Number of successful extensions: 846
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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