Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c16r
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    28   1.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.4  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   4.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.9  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   7.8  

>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 63  RVYLYLEVPSCKLRIYNYSI 4
           ++YLY   PSC +R+Y+  I
Sbjct: 242 QIYLYFSYPSCLVRVYSIGI 261


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 249  QP*HLILSKLFQLHFFVALPSDRTTFVLCHLLIYIV 142
            QP   ++ K+ +L+FF A       F LCHLL++++
Sbjct: 1760 QPSRELICKMTELNFFAA------DFFLCHLLLFLM 1789


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +3

Query: 18  KSLVCTKEPLGIDKLEYKIYYILGILCNFILTKHFQSHSF----YKQYKLTSGKVQKLFY 185
           KS+   KE LG+ +  YK Y++L +   F  +  F ++ F       + + +  +  L Y
Sbjct: 256 KSMGWKKELLGLVQTLYKEYWVLLLFPMFFSSNWFTTYQFNDFNLAYFNIRTRSLNNLLY 315

Query: 186 HLATPRKNGVGRVYL 230
             A    + V  ++L
Sbjct: 316 WFAQIMGSAVAALFL 330


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 90   FLKYNIFYTRVYLYLEVPSCKL-RIYNYS 7
            FLK  + +  +Y++  VP C + R Y Y+
Sbjct: 2346 FLKLVVLWKNIYVWTNVPDCDISRFYCYT 2374


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 538 ELRILQTSRNMS*LNEACGLSIRGAGCPRAEPTEVEALPDAS 663
           ELR++ +S       E CG +I  A   R +P++   LPD S
Sbjct: 301 ELRLIDSS-----FKELCGDAIGLANYSRLQPSDYHLLPDPS 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,187
Number of Sequences: 5004
Number of extensions: 52350
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)