Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c16r
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594...    31   0.86 
12_02_0493 - 19677481-19677776,19678953-19679017,19679455-196795...    31   1.1  
03_06_0700 + 35616619-35617069,35619123-35619502                       29   2.6  
10_08_0134 + 15107411-15107939,15108049-15108124,15108332-151084...    29   4.6  
01_02_0010 + 10142450-10142570,10142811-10142965,10143295-101434...    28   8.0  

>01_01_0769 -
           5944910-5946613,5946768-5946887,5948243-5948300,
           5948544-5948627,5949356-5949456,5949562-5949745,
           5950746-5950774,5951134-5951226
          Length = 790

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 39  EPLGIDKLEYKIYYILGILCNFILTKHFQSHSFYKQYKLTSGKVQKLFYHL--ATPRKNG 212
           +P  +  ++ ++ YI+G+   F   K  + H+F  QY    GK++ +      A  +   
Sbjct: 77  DPYSVRVIQRRLVYIVGMPSEFASDKVLRQHNFLGQY----GKIESIIIDNIGANQQIPD 132

Query: 213 VGRVYLKLSVKAEA 254
            GRVY+  S + EA
Sbjct: 133 SGRVYVTFSREEEA 146


>12_02_0493 -
           19677481-19677776,19678953-19679017,19679455-19679594,
           19680723-19680801,19683476-19683675
          Length = 259

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +3

Query: 30  CTKEPLGIDKLEYKIYYILGILCNFILTKHF-QSHSFYKQYKLTSGKVQKLFYHLATPRK 206
           C  +P  ++  E       G+LC  IL K+F   H F +++ L       L  ++A   K
Sbjct: 112 CANQP-DLEGPEVPNIITTGVLCQIILNKNFLVGHEFKQRFSLGPWIQAMLVLYIAITGK 170

Query: 207 NGVGRVYLKLSVKAEA 254
                 YL   +K EA
Sbjct: 171 KKPSTDYLPAKLKVEA 186


>03_06_0700 + 35616619-35617069,35619123-35619502
          Length = 276

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +1

Query: 607 GAGCPRAEPTEVEALPDASPPVWFRLGV 690
           GA  PR     V  LP ASPP W RL V
Sbjct: 17  GASLPRPVSARVPLLPRASPPTW-RLSV 43


>10_08_0134 +
           15107411-15107939,15108049-15108124,15108332-15108459,
           15108960-15109037,15109734-15110263
          Length = 446

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 509 NLSKIRYLVYTNLYSKFHKIYQTLKLRRRYFRHSTKKRKIIYI 381
           NL +   L YTN  S     +QTL    R FR++T    + +I
Sbjct: 292 NLPRTLLLYYTNFVSSPEFYFQTLACNSRRFRNTTVNHDLHFI 334


>01_02_0010 +
           10142450-10142570,10142811-10142965,10143295-10143477,
           10143691-10144043,10144220-10144388
          Length = 326

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 607 LGSIVHRLRLIRTCFDLFGEYGVHTPTTRC 518
           +GS++HR   +R   +LF +Y +   TTRC
Sbjct: 246 IGSVLHRSEFVRLLRELFPQYPI---TTRC 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,827
Number of Sequences: 37544
Number of extensions: 270157
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)