Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c16r
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)               29   4.7  
SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  

>SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 99  NFILTKHFQSHSFYKQYKLTS-GKVQKLFYHLATPRKNGV 215
           N +LT H ++HS  K YK T  GK      HLAT R+  +
Sbjct: 586 NGVLTTHMRTHSGEKPYKCTQCGKAFAHNGHLATHRRTHI 625


>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
          Length = 730

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 132 SFYKQYKLTSGKVQKLFYHLATPRKNGVGRVYLKLSVKAEA*VHSLFQTFKFVRK 296
           SFY   +LT+ +VQ+L  H      + + +VY     K  A  ++L   +  ++K
Sbjct: 9   SFYFLTELTAERVQRLLSHTRMKEVSRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63


>SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 120 FQSHSFYKQYKLTSGKVQKLFYHLATPRKNGVG 218
           F  H F +++K    + +KL+ H+ + R+N VG
Sbjct: 406 FVDHGFSQEHKNYKSQPKKLWKHIKSKRQNSVG 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,470,750
Number of Sequences: 59808
Number of extensions: 338900
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)