Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c16r
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53139-5|AAK18933.2| 322|Caenorhabditis elegans Serpentine rece... 29 4.1
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical p... 27 9.6
Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical p... 27 9.6
Z82051-1|CAB04815.1| 350|Caenorhabditis elegans Hypothetical pr... 27 9.6
U50193-8|AAL11478.2| 394|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like p... 27 9.6
>U53139-5|AAK18933.2| 322|Caenorhabditis elegans Serpentine
receptor, class xa protein4 protein.
Length = 322
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -2
Query: 515 LINLSKIRYLVYTNLYSKFHKIYQTLKLRRRYFRHSTKKRKIIYI 381
++ +S+I + + T + + F + +++R+F ST K +YI
Sbjct: 4 VLTISQITFTILTTMCTVFDIVLLLSVIKQRFFTSSTSKTPFVYI 48
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 270 TENVLKLQP*HLILSKLFQLH-FFVALPS 187
T N+LK P H+I ++F LH F LPS
Sbjct: 2156 THNILKYSPQHVIAQRVFFLHDEFTHLPS 2184
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 270 TENVLKLQP*HLILSKLFQLH-FFVALPS 187
T N+LK P H+I ++F LH F LPS
Sbjct: 2165 THNILKYSPQHVIAQRVFFLHDEFTHLPS 2193
>Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical
protein M88.3 protein.
Length = 354
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 563 RLVWRIRSSHTYNSLQLINLSKI-RYLVYTNLYSKFHK 453
R V R+R+ YNSL+L N SK+ Y+V+ + F K
Sbjct: 310 RRVRRVRTKQ-YNSLELYNFSKVDEYIVFVMDFGAFLK 346
>Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical
protein JC8.12b protein.
Length = 304
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 402 FCR-MSKISTTKF*SLIYFVEFRV*ICVN*VSNLG*VYKLQRVVGV*--TPYSPNKSKHV 572
FC MSKI T+ YF ++ V I + + V ++ RV+G+ PY K +H+
Sbjct: 10 FCSLMSKIMVTR-----YFFDYPVVILMMQSAATLFVIEVTRVLGILKVAPYCFEKGRHI 64
Query: 573 LIKRSLWTI 599
+I L+TI
Sbjct: 65 VIPSILYTI 73
>Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical
protein JC8.12a protein.
Length = 315
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 402 FCR-MSKISTTKF*SLIYFVEFRV*ICVN*VSNLG*VYKLQRVVGV*--TPYSPNKSKHV 572
FC MSKI T+ YF ++ V I + + V ++ RV+G+ PY K +H+
Sbjct: 21 FCSLMSKIMVTR-----YFFDYPVVILMMQSAATLFVIEVTRVLGILKVAPYCFEKGRHI 75
Query: 573 LIKRSLWTI 599
+I L+TI
Sbjct: 76 VIPSILYTI 84
>Z82051-1|CAB04815.1| 350|Caenorhabditis elegans Hypothetical
protein T23D5.1 protein.
Length = 350
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +3
Query: 18 KSLVCTKEPLGIDKLEYKIYYILGILCNFILTKHFQSHSFYKQYKLTSGKVQKLFYHLAT 197
+SL+C +GI L+Y I I GIL + + + K L Y L
Sbjct: 197 QSLICIFGQMGIMSLQYMIMMICGILIYKQIKADLKETTMILNSKFQKQIFNALLYQLVA 256
Query: 198 P 200
P
Sbjct: 257 P 257
>U50193-8|AAL11478.2| 394|Caenorhabditis elegans Hypothetical
protein ZK328.6 protein.
Length = 394
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 372 RIFDIYDFPFFCRMSKI 422
+IFD YD+P C+M ++
Sbjct: 20 KIFDQYDYPVLCKMERV 36
>AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like
protein protein.
Length = 315
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 402 FCR-MSKISTTKF*SLIYFVEFRV*ICVN*VSNLG*VYKLQRVVGV*--TPYSPNKSKHV 572
FC MSKI T+ YF ++ V I + + V ++ RV+G+ PY K +H+
Sbjct: 21 FCSLMSKIMVTR-----YFFDYPVVILMMQSAATLFVIEVTRVLGILKVAPYCFEKGRHI 75
Query: 573 LIKRSLWTI 599
+I L+TI
Sbjct: 76 VIPSILYTI 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,202,885
Number of Sequences: 27780
Number of extensions: 279777
Number of successful extensions: 575
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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