Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c16r
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28970.1 68416.m03621 expressed protein contains Pfam domain ...    31   0.95 
At4g18490.1 68417.m02742 hypothetical protein                          28   6.7  

>At3g28970.1 68416.m03621 expressed protein contains Pfam domain
           PF03556: Domain of unknown function (DUF298)
          Length = 295

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 255 KLQP*HLILSKLFQLHFFVALPSDRTTFVLCHLLIYIVCKRNGTENVSL 109
           K Q  + I  +LF+L   + L  D T F   +  ++ +C+ NG +N+++
Sbjct: 59  KFQARNSIFDELFKLMSRLDLMVDFTEFTCFYDFVFFMCRENGQKNITI 107


>At4g18490.1 68417.m02742 hypothetical protein 
          Length = 594

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +3

Query: 18  KSLVCTKEPLGIDKLEYKIYYILGILCNFILTKHFQSHSFYKQYKLTSGKVQKLFYHL 191
           K+   TKE   +++  + I  IL I+CN +  KH ++     +  + + K+  L + L
Sbjct: 529 KAEAYTKELENVNRALFSIMNILNIICNILKKKHEEAKELLVRAVVDNNKLLMLNHPL 586


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,054,867
Number of Sequences: 28952
Number of extensions: 244406
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)