Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c16f
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    35   0.047
04_04_0732 + 27635212-27635865                                         33   0.19 
04_04_1243 + 32029332-32029738,32031785-32032172                       30   1.3  
10_08_0080 - 14707309-14707420,14707799-14707846,14708418-147085...    29   4.1  
02_05_0810 - 31934965-31935013,31935096-31935217,31935328-319355...    28   7.1  
02_04_0474 - 23202739-23203011,23203103-23203469,23203592-232039...    28   7.1  
07_03_1162 + 24437396-24438652                                         27   9.4  
04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684     27   9.4  

>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -2

Query: 486 PSKTQGRVQRVQPPLHN*GCAC*VSRGKGAPALAHMGTHRLPGPYSPTNPRAVGAVNDRV 307
           P ++     RV    H   C C   R  G+P+L    +   PGP+S T       +N RV
Sbjct: 45  PPQSLHASSRVPAARHRIVCPC--RRRGGSPSLTRRSSPEKPGPFSQTRSPETEKMNKRV 102

Query: 306 VKKTRSHM 283
            ++ R +M
Sbjct: 103 ERRKRKYM 110


>04_04_0732 + 27635212-27635865
          Length = 217

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = +3

Query: 441 VAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIEFLNAIDWN 620
           V +A    L   +++V +KF++D    +    S +AA GG+   +L  LE++FL  + + 
Sbjct: 108 VVSANAQRLLTTAILVASKFVEDRNYKN----SYFAAVGGLTAAELSSLELDFLFLMQFR 163

Query: 621 IFVS 632
           + VS
Sbjct: 164 LNVS 167


>04_04_1243 + 32029332-32029738,32031785-32032172
          Length = 264

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 441 VAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIEFLNAIDWN 620
           VA+     L L  L+V +K L D   ++      +A  GG+   ++ +LE+E L  +D+ 
Sbjct: 113 VASRNVHRLLLACLLVASKVLDDFHHNNAF----FARVGGVSNAEMNRLELELLAVLDFE 168

Query: 621 IFVS 632
           + +S
Sbjct: 169 VMLS 172


>10_08_0080 -
           14707309-14707420,14707799-14707846,14708418-14708543,
           14708586-14708743
          Length = 147

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 414 SRGKGAPALAHMGTHRLPGPYSPTNPRAVGAVNDRVVKK 298
           SR  G+P+L    +   PGP+S T       +N RV ++
Sbjct: 53  SRRGGSPSLTRRSSPEKPGPFSQTRSPETEKMNKRVERR 91


>02_05_0810 -
           31934965-31935013,31935096-31935217,31935328-31935519,
           31937689-31937759,31938708-31938819,31938911-31939015
          Length = 216

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 570 SVPYPQRQPTRSKSP-HRLHHRLVGIYYLPSKTQGRVQRVQPPL 442
           +VP  +++P R  +P H   +R  G  Y P    GRV R + P+
Sbjct: 167 NVPGMKQRPPRGYNPYHGYPYRSYGAPYFPPYGYGRVPRFRRPM 210


>02_04_0474 -
           23202739-23203011,23203103-23203469,23203592-23203990,
           23204060-23204397,23204558-23204782,23205025-23205073,
           23205281-23205462
          Length = 610

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 380 WGHTGCPGHTRRPIRV 333
           WGHTGC GH     RV
Sbjct: 459 WGHTGCLGHGDEEYRV 474


>07_03_1162 + 24437396-24438652
          Length = 418

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 326 PTARGLVGEYGPGSLCVPMCASAGAPLPRE 415
           P A  L   YG     V +C  AGAP+P +
Sbjct: 368 PLANELKRYYGKAPAVVELCVRAGAPVPAQ 397


>04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684
          Length = 402

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -2

Query: 408 GKGAPAL--AHMGTHRLPGPYSPTNPRAVGAVNDRVVKKTRSHMRSQ 274
           G G PAL     G  R  GP       A GA  D VV   R  MRS+
Sbjct: 196 GDGEPALLLVRRGGRRRAGPLCEHAAAAAGAAYDDVVGVYRGFMRSR 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,623,576
Number of Sequences: 37544
Number of extensions: 391817
Number of successful extensions: 910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)