Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c16f
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.)               59   3e-09
SB_37334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)           29   3.2  
SB_53205| Best HMM Match : PKD (HMM E-Value=0.24)                      27   9.7  

>SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 37/122 (30%), Positives = 54/122 (44%)
 Frame = +3

Query: 183 MGDHKEFLKRITKTLYYGQLPSLPCLSLPVTEISCETWXXXXXXXXXXXXHADWSASMAR 362
           M DH+ F  R+ KTLYYG+       S PVT                     +  +  ++
Sbjct: 1   MADHRSFSNRLRKTLYYGEFADASLPSDPVTG------NLRPVRKPFPLAAVERPSVASQ 54

Query: 363 AACVSPCAXXXXXXXXXXXNKHNPNYVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSE 542
            A +SPCA                      + S++FL+S+MV +K+L D+GED+EV   E
Sbjct: 55  RAKISPCALMMGLLYAERLRLKPTTSSKDLSSSDVFLISVMVASKYLYDEGEDEEVFNDE 114

Query: 543 WA 548
           WA
Sbjct: 115 WA 116


>SB_37334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
 Frame = +1

Query: 142 QKDDGKGQGPRP------RAWVIIKSF*SALQRPYTTGSCLHFRASACQSLRSHVR 291
           Q+D   G G RP       AWV  K+  S     +     LH  A AC+S R HVR
Sbjct: 17  QRDPHPGTGKRPCSDATDTAWVTAKNRLSVTY--FLESETLHVAADACRSGRRHVR 70


>SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)
          Length = 1142

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 72  NVPREKHLTIRIKINRAIIMSNISKRRREGSRSK 173
           N  R++ + I I++N+ + + N+SK    GS+ +
Sbjct: 521 NTTRQERINILIRMNQVMSVQNVSKEHSRGSKGR 554


>SB_53205| Best HMM Match : PKD (HMM E-Value=0.24)
          Length = 198

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 636 HRSQKYSNLWRLGIQFPVS*AASVPYPQRQPTRSKSPHRLHHRLVGIYYLP 484
           H +  Y ++W   I FPVS A  V   Q   +   SP     R+   Y +P
Sbjct: 124 HMTSLYESMWNQSISFPVSDAKKVVVGQISASCYPSPTNSSMRMT-TYVMP 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,787,275
Number of Sequences: 59808
Number of extensions: 419206
Number of successful extensions: 1071
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)