Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c16f
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026215-9|AAB71318.2| 319|Caenorhabditis elegans Hypothetical ... 46 3e-05
U13070-6|AAC46643.1| 470|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 2.1
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 29 2.1
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81106-1|CAB03221.2| 352|Caenorhabditis elegans Hypothetical pr... 28 6.4
>AF026215-9|AAB71318.2| 319|Caenorhabditis elegans Hypothetical
protein F09G2.2 protein.
Length = 319
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/149 (20%), Positives = 62/149 (41%)
Frame = +3
Query: 189 DHKEFLKRITKTLYYGQLPSLPCLSLPVTEISCETWXXXXXXXXXXXXHADWSASMARAA 368
D ++ KR+ ++L YG L+ P++++ + + + SA +++
Sbjct: 7 DFRKMRKRMKRSLNYGTKQPAS-LNYPLSQLVVDYFDKTSTFDYM---EPNTSAMISKCG 62
Query: 369 CVSPCAXXXXXXXXXXXNKHNPNYVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWA 548
PC + + P L++ +L++ +K++ D D V SEWA
Sbjct: 63 YADPCTLVVALVYLDRLRVQKKAFFESTDPVSLYVPALVLASKYMHDADTYDRVSNSEWA 122
Query: 549 ASGGMELKQLKKLEIEFLNAIDWNIFVSD 635
S M + L E + +DWN+ V +
Sbjct: 123 ESLKMTPEDLNAKEWNLVKNLDWNVAVKN 151
>U13070-6|AAC46643.1| 470|Caenorhabditis elegans Hypothetical
protein F01F1.9 protein.
Length = 470
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 218 KDPILRAAAFTSVPQPASH*DLM*DLVFFTTRSFTAPTARGLVGEYGPGS 367
KD +L+A FT +P+ + H D+ +F T++ +A A + G Y PGS
Sbjct: 37 KDRLLQAG-FTELPE-SGHWDIQPTSKYFVTKNRSAILAFAVGGSYKPGS 84
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 438 YVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAAS 554
Y+ PS + VS++ G+ D GE E+IC+ +S
Sbjct: 1974 YIEVVEPSRIATVSILGGSSQWFDQGEKGELICTATGSS 2012
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 438 YVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAAS 554
Y+ PS + VS++ G+ D GE E+IC+ +S
Sbjct: 2067 YIEVVEPSRIATVSILGGSSQWFDQGEKGELICTATGSS 2105
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 438 YVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAAS 554
Y+ PS + VS++ G+ D GE E+IC+ +S
Sbjct: 1880 YIEVVEPSRIATVSILGGSSQWFDQGEKGELICTATGSS 1918
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 438 YVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAAS 554
Y+ PS + VS++ G+ D GE E+IC+ +S
Sbjct: 2067 YIEVVEPSRIATVSILGGSSQWFDQGEKGELICTATGSS 2105
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 438 YVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAAS 554
Y+ PS + VS++ G+ D GE E+IC+ +S
Sbjct: 1974 YIEVVEPSRIATVSILGGSSQWFDQGEKGELICTATGSS 2012
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 438 YVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAAS 554
Y+ PS + VS++ G+ D GE E+IC+ +S
Sbjct: 2067 YIEVVEPSRIATVSILGGSSQWFDQGEKGELICTATGSS 2105
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 438 YVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAAS 554
Y+ PS + VS++ G+ D GE E+IC+ +S
Sbjct: 1880 YIEVVEPSRIATVSILGGSSQWFDQGEKGELICTATGSS 1918
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 438 YVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAAS 554
Y+ PS + VS++ G+ D GE E+IC+ +S
Sbjct: 2067 YIEVVEPSRIATVSILGGSSQWFDQGEKGELICTATGSS 2105
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 438 YVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAAS 554
Y+ PS + VS++ G+ D GE E+IC+ +S
Sbjct: 2066 YIEVVEPSRIATVSILGGSSQWFDQGEKGELICTATGSS 2104
>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical protein
K12D12.2 protein.
Length = 1696
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 447 AAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIEFLNAIDWNI 623
A P +M+ N + +D + ++ IC+ ++ SG + + L I+F DWNI
Sbjct: 1438 ADLPKHRKAAGIMLANDLIHEDLKGNKKICNHFSKSGVPRILCEELLHIDF----DWNI 1492
>Z81106-1|CAB03221.2| 352|Caenorhabditis elegans Hypothetical
protein R06C1.2 protein.
Length = 352
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +2
Query: 290 DLVFFTTRSFTAPTARGLVGEYGPGSLCVPMCASAGAPLPRETQQAQP*LCSGGCTL 460
DLV + R+ T G G+Y SLCV + L ETQ+ Q +C TL
Sbjct: 35 DLVQYRCRNLFDNTVIG--GKYSRASLCVDTIRALQPHLRDETQELQA-VCEAAATL 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,397,381
Number of Sequences: 27780
Number of extensions: 302271
Number of successful extensions: 783
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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