Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c16f
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60550.1 68416.m06773 cyclin family protein similar to cyclin... 34 0.069
At3g21870.1 68416.m02758 cyclin family protein similar to cyclin... 33 0.21
At2g45080.1 68415.m05611 cyclin family protein similar to cyclin... 32 0.37
At5g51380.1 68418.m06370 F-box family protein contains Pfam PF00... 30 1.5
At5g61650.1 68418.m07735 cyclin family protein similar to cyclin... 29 2.0
At5g51370.1 68418.m06369 F-box family protein similar to unknown... 29 2.0
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 29 2.6
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 29 2.6
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 29 2.6
At2g44740.1 68415.m05567 cyclin family protein similar to cyclin... 29 3.4
At5g64800.1 68418.m08148 CLE21, putative CLAVATA3/ESR-Related 21... 28 6.0
At4g03080.1 68417.m00416 kelch repeat-containing serine/threonin... 28 6.0
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa... 27 7.9
At5g23230.1 68418.m02717 isochorismatase hydrolase family protei... 27 7.9
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 27 7.9
>At3g60550.1 68416.m06773 cyclin family protein similar to cyclin 2
[Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
cruzi] GI:12005317; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 230
Score = 34.3 bits (75), Expect = 0.069
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 429 NPNY-VAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIEFLN 605
NP + ++ L + ++M+ +K+++D + S +A GG+E + L KLE+EFL
Sbjct: 109 NPGFRISLTNVHRLLITTIMIASKYVEDLNYRN----SYFAKVGGLETEDLNKLELEFLF 164
Query: 606 AIDWNIFVS 632
+ + + V+
Sbjct: 165 LMGFKLHVN 173
>At3g21870.1 68416.m02758 cyclin family protein similar to cyclin 2
[Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
cruzi] GI:12005317; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 210
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/88 (25%), Positives = 37/88 (42%)
Frame = +3
Query: 369 CVSPCAXXXXXXXXXXXNKHNPNYVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWA 548
C C +KH + V + L + +M+ K L D ++E +A
Sbjct: 82 CSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEF----YA 137
Query: 549 ASGGMELKQLKKLEIEFLNAIDWNIFVS 632
GG+ L K+E+E L +D+ + VS
Sbjct: 138 RVGGVSNADLNKMELELLFLLDFRVTVS 165
>At2g45080.1 68415.m05611 cyclin family protein similar to cyclin 2
[Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
cruzi] GI:12005317; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 222
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +3
Query: 465 LFLVSLMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIEFLNAIDWNIFVS 632
L + ++M+ +K+++D + S +A GG+E + L LE+EFL + + + V+
Sbjct: 116 LLITTIMIASKYVEDMNYKN----SYFAKVGGLETEDLNNLELEFLFLMGFKLHVN 167
>At5g51380.1 68418.m06370 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 479
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 480 LMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIEFL 602
L + K + ED ++C W + G L+ +K + EFL
Sbjct: 73 LKILEKLPESQNEDVSLVCKRWLSVQGRRLRSMKVFDWEFL 113
>At5g61650.1 68418.m07735 cyclin family protein similar to cyclin 2
[Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
cruzi] GI:12005317; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 219
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = +3
Query: 465 LFLVSLMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIEFLNAIDWNIFVS 632
L + S++V KF+ D ++E +A GG+ +++ LE++FL I + + V+
Sbjct: 107 LIITSVLVSAKFMDDLSYNNEY----YAKVGGISREEMNMLELDFLFGIGFELNVT 158
>At5g51370.1 68418.m06369 F-box family protein similar to unknown
protein (emb|CAB82288.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 355
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 480 LMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIEFL 602
L + K + D ++C W G L+ LK L+ +FL
Sbjct: 38 LKIIEKLPESQSNDVSLVCKRWLNLQGQRLRSLKLLDFDFL 78
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 203 KLFMITHALGLGP*PFPSSF*YIRHYNSPINLYSYS*MFFPWYIYITNIY 54
++ M T G GP P P + + + P+NL+ YS + + TN+Y
Sbjct: 112 RVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLY 161
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 203 KLFMITHALGLGP*PFPSSF*YIRHYNSPINLYSYS*MFFPWYIYITNIY 54
++ M T G GP P P + + + P+NL+ YS + + TN+Y
Sbjct: 112 RVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLY 161
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 203 KLFMITHALGLGP*PFPSSF*YIRHYNSPINLYSYS*MFFPWYIYITNIY 54
++ M T G GP P P + + + P+NL+ YS + + TN+Y
Sbjct: 112 RVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLY 161
>At2g44740.1 68415.m05567 cyclin family protein similar to cyclin 2
[Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
cruzi] GI:12005317; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 202
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +3
Query: 465 LFLVSLMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIEFLNAIDWNIFVS 632
L + S+MV KFL D ++ + +A GG+ K++ LE++FL + + + V+
Sbjct: 99 LLITSVMVAAKFLDDLYYNN----AYYAKVGGISTKEMNFLELDFLFGLGFELNVT 150
>At5g64800.1 68418.m08148 CLE21, putative CLAVATA3/ESR-Related 21
(CLE21)
Length = 106
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 129 MSNISKRRREGSRSKTKGMGDHKEFLKRITKT 224
MSN +K RR SR + K GD +E KR T
Sbjct: 67 MSNFNKVRRRSSRFRRKTDGDEEEEEKRSIPT 98
>At4g03080.1 68417.m00416 kelch repeat-containing serine/threonine
phosphoesterase family protein contains Pfam profiles:
PF00149 calcineurin-like phosphoesterase, PF01344 kelch
motif
Length = 881
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 573 ASVPYPQRQPTRSKSPHRLHHRLVGIYYLP 484
+ VP P ++ TR KSP LH +++ P
Sbjct: 508 SDVPQPTKKFTRQKSPQGLHKKVIAALLRP 537
>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
profile PF01554: MatE Uncharacterized membrane protein
family
Length = 502
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 11 FQVP-LLSHDFVHDCRIYL*CKCT 79
F +P LL++ F+H RIYL CK T
Sbjct: 152 FSLPDLLANSFLHPLRIYLRCKGT 175
>At5g23230.1 68418.m02717 isochorismatase hydrolase family protein
low similarity to SP|P45743 Isochorismatase (EC 3.3.2.1)
(2,3 dihydro-2,3 dihydroxybenzoate synthase)
(Superoxide-inducible protein 1) (SOI1) {Bacillus
subtilis}; contains Pfam profile PF00857:
isochorismatase family protein
Length = 198
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 296 VFFTTRSFTAPTARGLVGEYGPGSL 370
VFFT + +PT G++GE+ G L
Sbjct: 57 VFFTRHNHKSPTDHGMLGEWWNGDL 81
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 558 PQRQPTRSKSPHRLHHRLVGIYYLPSKTQGRVQRVQ 451
P R+P +S +L RL Y+LPSK + ++ + Q
Sbjct: 33 PSRKPPKSSLSQQLL-RLDDSYFLPSKHESKISKTQ 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,668,788
Number of Sequences: 28952
Number of extensions: 287502
Number of successful extensions: 693
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -