Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c15r
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 81 7e-16
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 71 1e-12
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 69 4e-12
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05) 29 3.0
SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9) 29 4.0
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 81.4 bits (192), Expect = 7e-16
Identities = 49/153 (32%), Positives = 82/153 (53%)
Frame = -1
Query: 738 DLNAQLLEMAYEGNDASMVIVLPNEINGLDGILQKLADGYDLTAELDKMFSTKVRVTVPK 559
D+ +++E+ Y G+D +MVI+LP E +G+ L+K D + M +T V V++PK
Sbjct: 182 DIKCRVVELPYSGDDTAMVIILPEEPSGIFS-LEKSIDVEIMEKWRRLMINTTVEVSIPK 240
Query: 558 FKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEVNXXXXXXX 379
F++ +++L +L LG+ IF+ + + L+ I + LYVS A+ KA IEVN
Sbjct: 241 FRLSQKLELRSLLQDLGVSDIFDSRKADLSGI-SAAKGLYVSSAIHKAHIEVNERGTVAA 299
Query: 378 XXXAMVVSGGITSAGGQFIRYFVANRPFLAAIH 280
+V++ F A+ PFL +IH
Sbjct: 300 ATTGVVMA----KRSLDMNEVFYADHPFLFSIH 328
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 70.9 bits (166), Expect = 1e-12
Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 2/153 (1%)
Frame = -1
Query: 735 LNAQLLEMAYEGNDASMVIVLPNEINGLDGILQKLADG--YDLTAELDKMFSTKVRVTVP 562
L Q++E+ Y G SMV++LPNE++GL + L + L +V VT+P
Sbjct: 213 LGCQIVELPYAGEKLSMVVLLPNEVDGLGKLESSLNKETLQEAMTSLRNSHPEEVEVTLP 272
Query: 561 KFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEVNXXXXXX 382
KF + E L + L +G +F+ + L+ I + PL VS+ V KAF+EVN
Sbjct: 273 KFTLTQEFSLGETLKGMGASDLFSPGKADLSGI--SAAPLVVSEVVHKAFVEVNEEGTIA 330
Query: 381 XXXXAMVVSGGITSAGGQFIRYFVANRPFLAAI 283
+ GI F AN PFL I
Sbjct: 331 AAATGV----GIMLMSMPMNPVFYANHPFLFLI 359
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 68.9 bits (161), Expect = 4e-12
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Frame = -1
Query: 726 QLLEMAYEGNDASMVIVLPNEINGLDGILQKLADGY--DLTAELDKMFSTKVRVTVPKFK 553
+LLE+ Y SMV+VLP+E GL Q L D+ + V V +PKFK
Sbjct: 179 KLLELPYVDTQLSMVLVLPDETEGLARFEQDLTHDKMTDIFNSVSSQRPADVEVYIPKFK 238
Query: 552 IETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEVNXXXXXXXXX 373
+ +E L + L +LG++ +F++ + T I E L+VS + KAF+EVN
Sbjct: 239 MTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVNEEGTEAAAA 298
Query: 372 XAMVVSGGITSAGGQFIRYFVANRPFLAAIHVREIPCFL 256
A ++ + F A+ PFL I + C L
Sbjct: 299 TAAIMMMRCAIMREPLV--FRADHPFLFLIQHCKSKCVL 335
>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1726
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -2
Query: 452 TSRCTYPRLCKKPSLKSTRKAPKQPPPQPWS*VAASRLQEDSSFD 318
TS+ P K+PSLK+ +K PK PWS VA + + + S +
Sbjct: 980 TSKAKKPSKRKRPSLKTVQKRPK---TVPWSCVACTFVNDPSMIE 1021
>SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)
Length = 901
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 203 LSNHCHCINLYLK*HGQSKIKKYN 132
LS HCH NLY+K +S I YN
Sbjct: 333 LSRHCHKANLYIKPKKRSAIMWYN 356
>SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -1
Query: 594 MFSTKVRV-TVPKFKIETEIDLLQVLP 517
++S VR+ TVPK K E EID L++ P
Sbjct: 87 LYSPSVRIYTVPKIKHENEIDSLKLFP 113
>SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)
Length = 381
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 474 LTKILDNDEPLYVSKAVQKAFIEVN 400
+TK LD DEPL + + +KA +E N
Sbjct: 80 ITKNLDKDEPLRIEISARKAVLEAN 104
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = -2
Query: 599 TKCSRPKCE*RCRNSRSKLRLIYFKFCPSWVFRRSSTARIPV*PRSWITTSRCTYPRLCK 420
T C P+C RC + L L K CPSW S P R T P C
Sbjct: 1618 TSCE-PECPVRCCSGSQTLDLGVSKTCPSWCSVSSCKPDCPA--RCCTTEPLSACPATCS 1674
Query: 419 KPSLK 405
S +
Sbjct: 1675 PDSCR 1679
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,256,989
Number of Sequences: 59808
Number of extensions: 457609
Number of successful extensions: 1260
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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