Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c15f
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 32 0.086
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 27 1.8
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.4
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 27 2.4
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 27 3.2
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 26 5.6
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 25 7.5
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 9.9
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 9.9
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 31.9 bits (69), Expect = 0.086
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 417 KEGDYELDPKLKKDAVEVFDADFEKVN---FDNGAAAAGLINKWVENKTNERI 566
K+G L+PK+ + V + +++EK++ FD+ GL++ + N+ N +
Sbjct: 1277 KDGSGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETTEGLLSSYCSNEWNREV 1329
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = +3
Query: 417 KEGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSLD 596
+ G Y P K ++ + NF I KWV+ + +K + SE S D
Sbjct: 21 RSGHYLYKPNGKTSCCSLYTIRLDSYNFKIAKEQKKAIKKWVKYVNGKPLKPMKSEISTD 80
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 393 NVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVN 497
+ ++ Y+K+G +EL + D V D DF+ V+
Sbjct: 1256 STSDNFYLKQGGFELLDTIITDFSNVMDPDFDDVS 1290
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 596 IEAVFTQEIFNAFICFIFNPFVY*AGGCGSVIEVNFFKICIEYLDSVLLKF 444
++ + EI A I FI + A CG ++ NF + I Y+D VL KF
Sbjct: 10 LQIILCTEIDEACIQFIKSQIEGIARACGPRMQANFEGVLIPYVD-VLGKF 59
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 120 IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTD 281
I++P+L+ +I K++A+ NEL S PL AE+ ++G D
Sbjct: 48 IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEFYFKKGSVGEKD 94
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 138 SMDSKALSSAITKFSAKFCNELDKKKNVVS 227
S DSK+L + F++K C E+DKK +++
Sbjct: 10 SCDSKSLG--VDDFTSKRCREIDKKALLIT 37
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 378 KGVTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTN 557
K V FNV IYI + D + + L ++ D + + A I++ TN
Sbjct: 105 KEVLFNVHGVIYISDEDLDANNPLLGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTN 164
Query: 558 ERIK 569
+R+K
Sbjct: 165 DRVK 168
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 9.9
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 126 NPVLSMDS--KALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTDPAHEEL 299
NP +S+D KAL S + + N NV SSP L+ + TD + +E
Sbjct: 255 NPEISLDEPIKALPSTTSDAPSSLLNT-----NVSSSPSKFRKFLSSVIPAKTDLSAKES 309
Query: 300 LTS 308
LTS
Sbjct: 310 LTS 312
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 465 EVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSLDSFTRLV 614
E++ A +N + A +NK+ NKT+E + L ++ ++ LV
Sbjct: 1766 EIYRASLPGLNASSEKEARDYLNKFAGNKTDELYQMLCNDPNVFDIESLV 1815
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,818
Number of Sequences: 5004
Number of extensions: 49727
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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