Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c15f
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      77   1e-14
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      60   2e-09
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      58   6e-09
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               28   6.0  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
 Frame = +3

Query: 204 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTIRXXXXXXXXXXXXIKG 383
           D + N+  SP S    LA+  LG       ++  +   P D   +              G
Sbjct: 25  DGQTNLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDG 84

Query: 384 VTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNF-DNGAAAAGLINKWVENKTNE 560
               +AN+++ + G +E+  + KK + E F A+   V++  N   A   +N+WVE KT +
Sbjct: 85  NQILMANRLFAQMG-FEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKD 143

Query: 561 RIKDLLSEDSLDSFTRLVLVNALYFXGTWQNQFD 662
           +IK+L+ E   +  T L LVNA+YF G+W   F+
Sbjct: 144 KIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFN 177


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = +3

Query: 393 NVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGL-INKWVENKTNERIK 569
           ++AN +++++ D+ +  +      + +DAD   V++      A   +N+WVE +T ++I 
Sbjct: 51  SIANNLFLQK-DFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKIC 109

Query: 570 DLLSEDSLDSFTRLVLVNALYFXGTWQNQF 659
           DL++    +  TRL LVNA+YF G W   F
Sbjct: 110 DLIAPGVFNMLTRLTLVNAIYFKGMWDKPF 139


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
 Frame = +3

Query: 396 VANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGL-INKWVENKTNERIKD 572
           + NKI+  + ++E+  +      E + ++  +V+F N A  A   +N WV  +T   IK+
Sbjct: 57  LVNKIWGHD-EFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKE 115

Query: 573 LLSEDSLDSFTRLVLVNALYFXGTWQNQF 659
           L+    ++S TRL++VNA+YF G W+ +F
Sbjct: 116 LIPHGVINSLTRLIIVNAVYFKGVWKKEF 144


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/52 (30%), Positives = 32/52 (61%)
 Frame = +3

Query: 426 DYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLS 581
           DY++D KL  DA +  D +FE+++ +N    A L  + ++ + N++  DL++
Sbjct: 373 DYQVDYKLLLDAKKKLDTEFEELSKNNSEREAVL--RSLQQEKNKKDIDLMT 422


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 417  KEGDYELD-PKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSL 593
            K+ D   D PK+  D +   D   + V+ DNGA+A+G   K V + + E+IK + S +  
Sbjct: 1063 KDSDSISDSPKVLPDGISKPDKVEQMVSDDNGASASG---KTVSDHSMEKIKGVNSGEGG 1119

Query: 594  D 596
            D
Sbjct: 1120 D 1120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,213,189
Number of Sequences: 59808
Number of extensions: 331174
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)