Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c13r
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0506 + 4017568-4017716,4018171-4018474 30 1.5
12_01_0204 + 1539859-1540158 30 1.5
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 30 1.5
04_04_1110 + 30973202-30973870 30 1.5
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 1.5
11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321... 29 4.5
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 29 4.5
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 29 4.5
12_02_0820 + 23437811-23440230,23440336-23440534 28 6.0
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 6.0
05_03_0478 - 14526180-14526578 28 6.0
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519... 28 7.9
01_06_0034 + 25769436-25769701,25769749-25769887 28 7.9
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 65 TADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGS 244
T +L V+ + ++ DG ++ ++ E D+E++ D Y + DV + V E GS
Sbjct: 72 TGELDVAYIYVEEPEIVDLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGS 129
Query: 245 GSLSNDVLK-GKSSGS 289
G V + G++SGS
Sbjct: 130 GCKGKAVEEHGEASGS 145
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 508 YAGSWSPPGASDIINFSGRVTDVKADD 428
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = -2
Query: 352 SASVGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSD--IGAAITIGD 179
S S E +R +R+L + +A + V + S N +S+ IGA I +G
Sbjct: 1440 SGSTFVVEPAVRALNRLLDEEYNAEIAATSEVVDLLVSFVPGTNHQLSEACIGALIKLGK 1499
Query: 178 VKSNLQINLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVL 59
+ N ++ + + V + + +PV ++ AE+ R+L
Sbjct: 1500 DRPNCKLEMVKAGIIEHVLDMILDVPVSVSSSIAELLRIL 1539
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 168 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 341
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +2
Query: 134 SNFASEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSSG 286
SN +D E +A C D+ + D++ EGD G L+ D + G
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDG 107
>11_01_0417 -
3214320-3214435,3214606-3214702,3214766-3214768,
3215054-3215196,3215309-3215348,3215713-3215765,
3215889-3215962,3216081-3216163,3216287-3216355,
3216456-3216800
Length = 340
Score = 28.7 bits (61), Expect = 4.5
Identities = 33/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +2
Query: 35 DDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTD 214
+DEL +LQ+ AD+ + + + V+G S E+ L V+ + + ++ D
Sbjct: 117 EDELLSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRLLVK-QLIRKW--KEIVD 173
Query: 215 NDVVCEGDGSGSLSNDVLKGKSSGSE---RPQDAAENADFSFSGTD*C*NSGNSQD*VES 385
D V + SG SN ++ +S + + Q +++ ++F +S + N+ +S+
Sbjct: 174 -DWVRLHNSSGDASNSIITDGNSPEKIQGKNQQSSQVSEFKYSPSPSRHNNSSSERVSNG 232
Query: 386 GADVADTTQMQGAEVISLDVSHAAREVND 472
A +A T H AR++N+
Sbjct: 233 IASIAATKH----RASPAPAHHNARQINN 257
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 149 EEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER-PQDAAENADF 325
EE D E+ D+ + CSSD + + D S NDV SG + +D ++ ++
Sbjct: 419 EEYD-EIFDDLEDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDSGEDNIEEDMEDDTEY 477
Query: 326 SFSGTD 343
S G++
Sbjct: 478 SSGGSE 483
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -2
Query: 454 RVTDVKADDFSSLH-LRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVLRSFASGG 278
++ + LH L + ++ ++ ++P + ++ + +L SF +G
Sbjct: 107 QIASIVCSGIQPLHNLTVLRFIEKKVGTGESIPWTQQQIDRGFADLLLCHTMLTSFPNG- 165
Query: 277 LALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINL 152
+A EN+V + D + ++D+ A I + QIN+
Sbjct: 166 VAAENLVKGCAGKYATGDEVRLADVFLAPQIYAAVTRFQINM 207
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 38 DELGDVLQNTADLGC-VVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTD 214
D+L +Q+ ++ VR + + + ++ WS+ EEI DI + Y S D
Sbjct: 252 DKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEI------DILDEYSSEFTAD 305
Query: 215 NDVVC 229
+DV C
Sbjct: 306 SDVPC 310
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 622 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 527
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>05_03_0478 - 14526180-14526578
Length = 132
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -1
Query: 140 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 36
SW RQ+ ED DG R RGQ RRP RH
Sbjct: 54 SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91
>05_01_0579 -
5196888-5196970,5197063-5197621,5197704-5197786,
5199165-5199279,5199376-5199473,5200136-5200183,
5200313-5200415,5201003-5201119,5201254-5201430,
5202563-5202593,5203492-5203604,5203824-5204036
Length = 579
Score = 27.9 bits (59), Expect = 7.9
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = -2
Query: 478 SDIINFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVL 299
S++++FS + F S L + G+ V P VSASV S G F +
Sbjct: 452 SEMMSFSTPLLQKLERCFPSNMLVDLPREGSSRTCVFHFPAVSASVVSLTGAGDCFVGGV 511
Query: 298 RSFASGGLALENVVAE--ATASVSLADNIIVSDIGAAITIGDVKSNLQIN 155
S GGL + VA A A S+ + D +A TI + + I+
Sbjct: 512 ISALCGGLGMMQSVAVGIAIAKSSVESEANIPDKFSAATIAGITPCISIS 561
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 203 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 313
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,147,275
Number of Sequences: 37544
Number of extensions: 349004
Number of successful extensions: 1220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -