Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c13r
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)                   37   0.017
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)                   31   1.1  
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)                       29   2.6  
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)                 29   2.6  
SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)                       29   2.6  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)                       29   2.6  
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 29   2.6  
SB_14604| Best HMM Match : PT (HMM E-Value=5.1)                        29   3.5  
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     28   6.0  
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         28   8.0  
SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)           28   8.0  

>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
          Length = 1544

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = +2

Query: 203 DVTDNDVVCEGDGSGSLS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 379
           DV+D D V +GD  G+ + +DV  G S G +    +++  D S +G +   N  N  D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224

Query: 380 ESGADVADTTQMQGAEVISLDVSHAAREVNDV 475
            + A+  D     GA     DVS+ A + +DV
Sbjct: 225 SNVANDGDDVS-NGAN-DGDDVSNGANDCDDV 254


>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1586

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
 Frame = -2

Query: 442 VKADDFSSLHLRRVSYVGTRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFAS 284
           V  D  ++ ++ R+S   TRL  N+  +   VS + GS++    GE R+ F+R  +SF+ 
Sbjct: 372 VTVDSGATGNMIRLS-TATRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSF 430

Query: 283 GGLALENVVAEATASVSLAD--NIIVSDIGAAITIGD 179
            GL +EN+  E  A     +  +I V      I +GD
Sbjct: 431 EGLVVENLDVEVLAGTPFMEKNDIAVRPAKGQIILGD 467


>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
          Length = 1410

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/112 (24%), Positives = 50/112 (44%)
 Frame = +3

Query: 60  RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 239
           +T+ +S + ++  +G+ SR +  +GP  R  +   R     P  +A P  L     A+ T
Sbjct: 243 KTQKSSVSQTMPVSGVHSRPVFDSGPGHRSLK---RFASEGPATMALP--LPDYGDAQTT 297

Query: 240 EAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT 395
             +A+    S  S PE+ +  +      + +A P+D+ +  T  T     PT
Sbjct: 298 NEIAANGETSGPSEPESSNKSSEPDSTPATNAPPSDSPSTTTPTTPQPPTPT 349


>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1505

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = -2

Query: 388 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 230
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 331 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 390

Query: 229 AD--NIIVSDIGAAITIGD 179
            +  +I V      I +GD
Sbjct: 391 MEKNDIAVRPAKGQIILGD 409


>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 230

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = -2

Query: 388 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 230
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 87  TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 146

Query: 229 AD--NIIVSDIGAAITIGD 179
            +  +I V      I +GD
Sbjct: 147 MEKNDIAVRPAKGQIILGD 165


>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
          Length = 1283

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = -2

Query: 388 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 230
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 343 TRLGCNITTSSQSVSQADGSSQLHVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 402

Query: 229 AD--NIIVSDIGAAITIGD 179
            +  +I V      I +GD
Sbjct: 403 MEKNDIAVRPAKGQIILGD 421


>SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -2

Query: 286 SGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQIN 155
           SGG  L    A+A  +VSL+D+   S   A I++ D++ +LQ++
Sbjct: 665 SGGRTLVQAAADAALAVSLSDH--CSQPSAPISLYDLRDSLQVH 706


>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = -2

Query: 388 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 230
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 8   TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 67

Query: 229 --ADNIIVSDIGAAITIGD 179
              ++I V      I +GD
Sbjct: 68  METNDIAVRPAKGQIILGD 86


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = +2

Query: 44  LGDVLQNTADLGCVVRQVDRDLL*EVVDGW-SNFASEEIDLEVRFDIANSYCSSDVTDND 220
           L D+L+N +     V   D D+  ++  G  S  +  E D+     + +S+   + TD D
Sbjct: 654 LADLLKNASARMDDVSSGDNDIPDDLTGGAVSQGSGGEDDI-----LVDSHTPKEFTDTD 708

Query: 221 V-VCEGDGSGSLSNDVLKGKSSGSERPQDAA 310
             + +G+GSGS  N +  G  +GS   +++A
Sbjct: 709 AKLLQGEGSGSQHNVMRGGSGAGSGNLKESA 739


>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 577

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = -2

Query: 388 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 230
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 342 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 401

Query: 229 AD--NIIVSDIGAAITIGD 179
            +  +I V      I +GD
Sbjct: 402 MEKNDIAVRPAKGQIILGD 420


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 604  PNSQRILDIVISN--LFNEIGELLRAADPLRRDGY 506
            P SQRIL +++    LFN+   L  AA+ L R GY
Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192


>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = -2

Query: 388 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 230
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 298

Query: 229 AD--NIIVSDIGAAITIGD 179
            +  +I V      I +GD
Sbjct: 299 MEKNDIAVRPAKGQIILGD 317


>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 1212

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = -2

Query: 388 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 230
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 352 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 411

Query: 229 AD--NIIVSDIGAAITIGD 179
            +  +I V      I +GD
Sbjct: 412 MEKNDIAVRPAKGQIILGD 430


>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
          Length = 344

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +3

Query: 285 EAKDLRTRLKMRISPSAEPTD-AETLGTARTKLSRVPT*LTRRK----CRELKSSALTSV 449
           +A  LRT+ K  + PS  P D A TLGT +    R  T  T+ +        +  A T  
Sbjct: 141 QATTLRTKPKPSV-PSHNPGDQATTLGTNKNPRDRAKTLGTKPQPWGPSHNPQDQAKTLG 199

Query: 450 TRPEKLMMSDAPGGLQEPA*PSR 518
           T+P+    S  P   Q+P+ PS+
Sbjct: 200 TKPQPWGPSHNPRDQQKPSGPSQ 222


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +3

Query: 180 SPIVIA-APMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 356
           +P  +A AP++ T+  +A  + +  +++T    S PEAK             A+ T  ET
Sbjct: 146 APAAVAPAPVTTTIPQAATASPSTQASSTAQEDSKPEAK----------PDEAKSTSTET 195

Query: 357 LGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLM 470
             +A T  S  P   T R   E   SAL + T  E L+
Sbjct: 196 AASATTTAS-TPAASTPRSYIEEAESALATGTEYEGLV 232


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +3

Query: 231  RETEAVASATTFSRASP--PEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 404
            ++T++ +S  T  R  P  P + D +++L       A PT + ++ T    +S   T ++
Sbjct: 983  QQTKSPSSYPTVIRPKPSLPYSHDFKSKLSSPYHSEARPTSSSSVQTGEKTISSHITGVS 1042

Query: 405  RRKCRELKSSALTSVTRPEKLMMSD 479
              +   + ++  ++ T P +    D
Sbjct: 1043 TAQITSMSTTTESTTTHPVRRTSRD 1067


>SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)
          Length = 207

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 379 NLVLAVPRVSASVG-SAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDI 203
           N+  +  R +AS G   + EIR+    + +   GGLAL  +   AT    L   ++VS +
Sbjct: 12  NISASRNRHTASFGHGGDKEIRVQYAEIVAAVLGGLALAWIADLATGRRGLGATVLVSGV 71

Query: 202 GAA 194
           G A
Sbjct: 72  GLA 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,050,675
Number of Sequences: 59808
Number of extensions: 388332
Number of successful extensions: 1266
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)