Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c13f
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)                   37   0.014
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.93 
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)                       29   2.2  
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)                 29   2.2  
SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)                       29   2.2  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)                       29   2.2  
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 29   2.2  
SB_14604| Best HMM Match : PT (HMM E-Value=5.1)                        29   2.9  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     28   5.0  
SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         28   6.6  
SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)           28   6.6  
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     27   8.7  

>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
          Length = 1544

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = -2

Query: 507 DVTDNDVVCEGDGSGSLS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 331
           DV+D D V +GD  G+ + +DV  G S G +    +++  D S +G +   N  N  D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224

Query: 330 ESGADVADTTQMQGAEVISLDVSHAAREVNDV 235
            + A+  D     GA     DVS+ A + +DV
Sbjct: 225 SNVANDGDDVS-NGAN-DGDDVSNGANDCDDV 254


>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1586

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
 Frame = +1

Query: 268 VKADDFSSLHLRRVSYVGTRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFAS 426
           V  D  ++ ++ R+S   TRL  N+  +   VS + GS++    GE R+ F+R  +SF+ 
Sbjct: 372 VTVDSGATGNMIRLS-TATRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSF 430

Query: 427 GGLALENVVAEATASVSLAD--NIIVSDIGAAITIGD 531
            GL +EN+  E  A     +  +I V      I +GD
Sbjct: 431 EGLVVENLDVEVLAGTPFMEKNDIAVRPAKGQIILGD 467


>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1505

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +1

Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 480
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 331 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 390

Query: 481 AD--NIIVSDIGAAITIGD 531
            +  +I V      I +GD
Sbjct: 391 MEKNDIAVRPAKGQIILGD 409


>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 230

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +1

Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 480
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 87  TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 146

Query: 481 AD--NIIVSDIGAAITIGD 531
            +  +I V      I +GD
Sbjct: 147 MEKNDIAVRPAKGQIILGD 165


>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
          Length = 1283

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +1

Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 480
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 343 TRLGCNITTSSQSVSQADGSSQLHVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 402

Query: 481 AD--NIIVSDIGAAITIGD 531
            +  +I V      I +GD
Sbjct: 403 MEKNDIAVRPAKGQIILGD 421


>SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +1

Query: 424 SGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQIN 555
           SGG  L    A+A  +VSL+D+   S   A I++ D++ +LQ++
Sbjct: 665 SGGRTLVQAAADAALAVSLSDH--CSQPSAPISLYDLRDSLQVH 706


>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +1

Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 480
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 8   TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 67

Query: 481 --ADNIIVSDIGAAITIGD 531
              ++I V      I +GD
Sbjct: 68  METNDIAVRPAKGQIILGD 86


>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 577

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +1

Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 480
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 342 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 401

Query: 481 AD--NIIVSDIGAAITIGD 531
            +  +I V      I +GD
Sbjct: 402 MEKNDIAVRPAKGQIILGD 420


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 106  PNSQRILDIVISN--LFNEIGELLRAADPLRRDGY 204
            P SQRIL +++    LFN+   L  AA+ L R GY
Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192


>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +1

Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 480
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 298

Query: 481 AD--NIIVSDIGAAITIGD 531
            +  +I V      I +GD
Sbjct: 299 MEKNDIAVRPAKGQIILGD 317


>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 1212

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +1

Query: 322 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 480
           TRL  N+  +   VS + GS++    GE R+ F+R  +SF+  GL +EN+  E  A    
Sbjct: 352 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 411

Query: 481 AD--NIIVSDIGAAITIGD 531
            +  +I V      I +GD
Sbjct: 412 MEKNDIAVRPAKGQIILGD 430


>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
          Length = 344

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = -3

Query: 425 EAKDLRTRLKMRISPSAEPTD-AETLGTARTKLSRVPT*LTRRK----CRELKSSALTSV 261
           +A  LRT+ K  + PS  P D A TLGT +    R  T  T+ +        +  A T  
Sbjct: 141 QATTLRTKPKPSV-PSHNPGDQATTLGTNKNPRDRAKTLGTKPQPWGPSHNPQDQAKTLG 199

Query: 260 TRPEKLMMSDAPGGLQEPA*PSR 192
           T+P+    S  P   Q+P+ PS+
Sbjct: 200 TKPQPWGPSHNPRDQQKPSGPSQ 222


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 531 IANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKSSGSERPQDAA 400
           + +S+   + TD D  + +G+GSGS  N +  G  +GS   +++A
Sbjct: 695 LVDSHTPKEFTDTDAKLLQGEGSGSQHNVMRGGSGAGSGNLKESA 739


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = -3

Query: 530 SPIVIA-APMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 354
           +P  +A AP++ T+  +A  + +  +++T    S PEAK             A+ T  ET
Sbjct: 146 APAAVAPAPVTTTIPQAATASPSTQASSTAQEDSKPEAK----------PDEAKSTSTET 195

Query: 353 LGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLM 240
             +A T  S  P   T R   E   SAL + T  E L+
Sbjct: 196 AASATTTAS-TPAASTPRSYIEEAESALATGTEYEGLV 232


>SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 31  TMKAFIFALALACVSAVPHRDVDFEPNSQRILDIVISNLF 150
           T ++   A++ AC  A+ H+D D+ P+   I+  +IS +F
Sbjct: 831 TERSVFSAMSTACKQAIFHQDHDYYPSIFIIIIAIISLIF 870


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -3

Query: 479  RETEAVASATTFSRASP--PEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 306
            ++T++ +S  T  R  P  P + D +++L       A PT + ++ T    +S   T ++
Sbjct: 983  QQTKSPSSYPTVIRPKPSLPYSHDFKSKLSSPYHSEARPTSSSSVQTGEKTISSHITGVS 1042

Query: 305  RRKCRELKSSALTSVTRPEKLMMSD 231
              +   + ++  ++ T P +    D
Sbjct: 1043 TAQITSMSTTTESTTTHPVRRTSRD 1067


>SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)
          Length = 207

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 331 NLVLAVPRVSASVG-SAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDI 507
           N+  +  R +AS G   + EIR+    + +   GGLAL  +   AT    L   ++VS +
Sbjct: 12  NISASRNRHTASFGHGGDKEIRVQYAEIVAAVLGGLALAWIADLATGRRGLGATVLVSGV 71

Query: 508 GAA 516
           G A
Sbjct: 72  GLA 74


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = +1

Query: 250 SGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVLRSFASG 429
           +GRV     DD  S H  RV+  G  L +VL         G  E +    S  L+SF   
Sbjct: 38  TGRVDQFSKDDIESAHWLRVA-CGQELKIVLKSGLQFRFDGFKESDFANLSEFLKSFF-- 94

Query: 430 GLALENV 450
           G+ LE +
Sbjct: 95  GVKLEEM 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,535,876
Number of Sequences: 59808
Number of extensions: 329805
Number of successful extensions: 1101
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)