Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c12r
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   2.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.9  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   6.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.0  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 590 TAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTLH 444
           T A    T+R + +  TLA+   N + G   + T      G +  ++LH
Sbjct: 4   TGADRLMTQRCKEKLNTLAISVMNQWPGVRLLVTEGWDEEGYHTPESLH 52


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 547 SSPSLLAQLTSSPEAP--GSPPPMSR 476
           SSP L  +++ SP  P   SPPP  R
Sbjct: 83  SSPILAEKVSVSPTTPPTPSPPPEER 108


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 547  SSPSLLAQLTSSPEAPGSPPPMSR 476
            S PS    + ++ E PG PP   R
Sbjct: 980  SEPSETVTIITAEEVPGGPPTSIR 1003


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
          protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 61 PASPESHPST 32
          P SPE+HP T
Sbjct: 37 PKSPENHPET 46


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = +1

Query: 145 RGPPESPLQ---VLRPLEPSTQ 201
           RGPP +PLQ   V   L+P  Q
Sbjct: 58  RGPPRTPLQPKLVAGKLKPKRQ 79


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 408 LHQQHPAHQPSQWKQQLCWYLG 343
           + +QHP H     +QQ   Y G
Sbjct: 171 MQEQHPQHHQPHHQQQHMMYGG 192



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 408 LHQQHPAHQPSQWKQQ 361
           +HQQ P HQ    +QQ
Sbjct: 198 MHQQGPPHQQPPIQQQ 213


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 124 LPPLPMVRGPPESPLQVL 177
           +PPL    GPP  P  V+
Sbjct: 114 VPPLTPSPGPPSHPYTVI 131


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 408 LHQQHPAHQPSQWKQQLCWYLG 343
           + +QHP H     +QQ   Y G
Sbjct: 173 MQEQHPQHHQPHHQQQHMMYGG 194



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 408 LHQQHPAHQPSQWKQQ 361
           +HQQ P HQ    +QQ
Sbjct: 200 MHQQGPPHQQPPIQQQ 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,024
Number of Sequences: 336
Number of extensions: 2681
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)