Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c12r
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 61 8e-10
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 59 3e-09
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 50 1e-06
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 38 0.005
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 38 0.005
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 30 1.7
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 2.2
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 3.9
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 3.9
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 3.9
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.8
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 6.8
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 6.8
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 27 8.9
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 27 8.9
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 27 8.9
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ... 27 8.9
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 60.9 bits (141), Expect = 8e-10
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 6/207 (2%)
Frame = -2
Query: 626 CGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTL 447
CG SL+ +TAAHC+ R + +++ +G SG T+ V +H YN+
Sbjct: 84 CGGSLIDPNFVLTAAHCFAKDR-RPTSYSVRVGGHRSGSGSPHRVTA-VSIHPWYNIGFP 141
Query: 446 HN-DVAIIN-HNHVGFTNNIQRINLASGSNNXXXXXXXXXXXGRTSDAASGANNQQKRQV 273
+ D AI+ H V + + I L S ++ S + R++
Sbjct: 142 SSYDFAIMRIHPPVNTSTTARPICLPSLP--AVENRLCVVTGWGSTIEGSSLSAPTLREI 199
Query: 272 SLQVITNAVCAR--TFGNNVIIASTLCVDGSNGR-STCSGDSGGPLTIGSGGSRQLIGIT 102
+ +++ C+ + + + S LC S G+ +C GDSGGPL G +L G+
Sbjct: 200 HVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVV 259
Query: 101 SFGSAQGCQR-GHPAGFARVTSFNSWI 24
S+G GC R G P + V S ++WI
Sbjct: 260 SWGI--GCARPGMPGVYGNVHSASTWI 284
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 58.8 bits (136), Expect = 3e-09
Identities = 60/228 (26%), Positives = 94/228 (41%), Gaps = 17/228 (7%)
Frame = -2
Query: 644 NGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGS 465
NG+ +CGA+++ + VTAAHC + Q R F N + + +H
Sbjct: 60 NGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHSG 115
Query: 464 YNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN-------NXXXXXXXXXXXGRTSDAA 306
YN T ND+A++ + I+ + L + N +S
Sbjct: 116 YNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEP 175
Query: 305 SGANNQQKRQVSLQVITNAVCARTFGN----NVIIASTLCVDGSNGRSTCSGDSGGPLTI 138
N+Q + S+ +I++ C +T+ +V I G+ T GDSGGPL I
Sbjct: 176 KLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYLHGTAPGDSGGPLLI 235
Query: 137 -GSGGSRQLIGITSFGSAQGC-----QRGHPAGFARVTSFNSWIRARI 12
S G IGITS+G A G Q P + R++ + WI+ I
Sbjct: 236 HKSNGEYVQIGITSYG-ADGLDGVIDQGKFPGVYTRISKYVPWIQGVI 282
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 50.0 bits (114), Expect = 1e-06
Identities = 57/223 (25%), Positives = 88/223 (39%), Gaps = 9/223 (4%)
Frame = -2
Query: 653 ALTNGRTSI--CGASLLTNTRSVTAAHCWRT-RRAQARQFTLALGTANIFSGGTRVT-TS 486
AL N T CGAS+L T +TAAHC+ R + + + N G ++
Sbjct: 43 ALRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQ 102
Query: 485 NVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSNNXXXXXXXXXXXGRTSDAA 306
+ + Y D +D+AI+ + G N + S + + +
Sbjct: 103 RIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVV--SGWGS 159
Query: 305 SGANNQQKRQVSLQVITNAV-CARTFG-NNVIIASTLCVDG-SNGRSTCSGDSGGPLTI- 138
G ++ Q +L I N C + + + S C G +C GDSGGP
Sbjct: 160 MGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGYLEGGIDSCQGDSGGPFACR 219
Query: 137 GSGGSRQLIGITSFGSAQGC-QRGHPAGFARVTSFNSWIRARI 12
G+ L G+ S+G GC Q+ P + V + SWI A I
Sbjct: 220 REDGAFVLAGVISWG--DGCAQKKQPGIYTMVAPYLSWISAII 260
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -2
Query: 227 NNVIIASTLCVDGSNGRSTCSGDSGGPLTI--GSGGSRQLIGITSFGSAQGCQRGHPAGF 54
++ I A+++ V + TC GDSGG L + G LI ITSFG+ +GC A F
Sbjct: 216 DDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSFGT-RGCPSNMLARF 274
Query: 53 ARVTSF 36
RV +
Sbjct: 275 TRVDMY 280
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 275 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQ--LIGIT 102
++L T A C +G ++ S C ++ CSGDSGG LT S + +I I
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIV 294
Query: 101 SFGS 90
S+GS
Sbjct: 295 SYGS 298
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 629 ICGASLLTNTRSVTAAHCWR 570
ICG +L+T +TAAHC++
Sbjct: 61 ICGGTLITLKHVLTAAHCFQ 80
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -2
Query: 317 SDAASGANNQQKRQVSLQVITNAVCARTFGNNVI---IASTLCVDGSNGRSTCSGDSGGP 147
+ AA+G NN S +V + A+ FG + I + GS G G SGG
Sbjct: 419 TSAANGGNNAGGGGSSAEVRSVGFGAQQFGGSQFARPIPAGGGGGGSGGYGAGGGGSGGY 478
Query: 146 LTIGSGGSRQLIGITSFGSA 87
G+GG+R S+GS+
Sbjct: 479 GAGGAGGARNSASNGSYGSS 498
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+D K +GE G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 446 HNDVAIINHNHVGFTNNIQRINLASGSNN 360
HN++A+ N + ++ +QRINL NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 446 HNDVAIINHNHVGFTNNIQRINLASGSNN 360
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 446 HNDVAIINHNHVGFTNNIQRINLASGSNN 360
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = -1
Query: 411 WLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRCCFGSQQP-TKTPSEPPGHYQRRL-RP 238
+L +Q PAHQ Q K+Q C C +C ++ P E + R++ R
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKCEKCAKHPHHHCKCEDQKEFNRKIVRA 589
Query: 237 HVWKQCDHC--LHP 202
K CD C HP
Sbjct: 590 LCPKTCDICNETHP 603
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 323 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 150
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 323 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 150
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 644 NGRTSICGASLLTNTRSVTAAHC 576
+G T++CG L+ + +T+AHC
Sbjct: 40 DGTTNVCGGVLIAPSIVITSAHC 62
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+ + G + G PGPP
Sbjct: 219 GNPGAPGQVTETPGTPGPAGAAGPPGPP 246
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+ + G + G PGPP
Sbjct: 229 GNPGAPGQVTETPGTPGPAGAAGPPGPP 256
>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
protein R155.2 protein.
Length = 1308
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 476 MHGSYNMDTLHNDVAIINHNHVGFTNNIQRIN 381
+H S N TL N I+N F ++Q+IN
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN 532
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,635,544
Number of Sequences: 27780
Number of extensions: 263961
Number of successful extensions: 1290
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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