Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c11r
(796 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 36 0.029
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.087
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 32 0.47
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12) 30 2.5
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 30 2.5
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 29 3.3
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0) 29 5.7
SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047) 28 7.6
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 36.3 bits (80), Expect = 0.029
Identities = 28/101 (27%), Positives = 47/101 (46%)
Frame = -3
Query: 593 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLP 414
V+AP+E+A+ AP +E VE T EE+E E + S E +++ V + P
Sbjct: 35 VEAPIEEAE---AP----EEEVEATVEEVEAPMEEAAASVEEAEVPIEKAETQPVDTEGP 87
Query: 413 IEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQ 291
+E E+A+ D E + + S + P+VE +
Sbjct: 88 VENAETSFEEAEAADEETEEPVKEAEGSFEEAEAPVVETEE 128
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 34.7 bits (76), Expect = 0.087
Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 3/166 (1%)
Frame = -3
Query: 776 KCRSSSEDXDFPA-DSVSFVENLDAPVEDADVLADSVNFXXXXXXXXXXXXXXXXXXSFV 600
+ +S E+ + P ++ V+ +APVE+A+ A+ +
Sbjct: 1078 EAEASFEEAEAPVVETEEPVKEAEAPVEEAEAPAEETEEPVKEAEASVEITEAP-----I 1132
Query: 599 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVD 420
+ +AP E + V +E V+ EE+E E S E ++E +
Sbjct: 1133 EEAEAPDERVESSVEEAEAPEEEVKAPVEEVEAPVEEAVASVEEAEVPIEEAETQAEDTE 1192
Query: 419 LPIEAQPEDLEKAQLVDLPVENVAEP--EDLSPVQVVNPIVENSQS 288
P+E ++KA + PVE P ED +P + VE S
Sbjct: 1193 GPVEDAEASVQKA---EAPVEETEAPFEEDEAPAEKTEKPVEAGPS 1235
Score = 34.7 bits (76), Expect = 0.087
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 8/160 (5%)
Frame = -3
Query: 776 KCRSSSEDXDFPA-DSVSFVENLDAPVEDADVLADSVNFXXXXXXXXXXXXXXXXXXSFV 600
+ + +E+ + P ++ + VE +AP+E+A+ + V V
Sbjct: 1106 EAEAPAEETEEPVKEAEASVEITEAPIEEAEAPDERVESSVEEAEAPEEEVKAP-----V 1160
Query: 599 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSE--VGSISWVEYPAE-----LDEDG 441
+ V+APVE+A V + E E E+ E E S+ E P E +ED
Sbjct: 1161 EEVEAPVEEAVASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPVEETEAPFEEDE 1220
Query: 440 NGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQ 321
+ P+EA P Q + PV+ P + + VQ
Sbjct: 1221 APAEKTEKPVEAGP----SVQEAEAPVKETERPVEEAEVQ 1256
Score = 34.3 bits (75), Expect = 0.12
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = -3
Query: 593 VDAPVEDADLQVAPVNIVDEPVEKTN---EEIENDSEVGSISWVEYPAELDEDGNGLVIV 423
VDAPV++A+ AP + PVE++ E+ E E + E A ++E
Sbjct: 725 VDAPVKEAE---APAGEAEAPVEESEVLVEKAEASVEEAEVPVDEVEASVEEAEAPAHEA 781
Query: 422 DLPIEAQPEDLEKAQL----VDLPVENVAEPE 339
+ P+E +E+A++ ++PVE PE
Sbjct: 782 EAPVEEAKSSIEEAEVPVEEAEVPVEEAEVPE 813
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = -3
Query: 590 DAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPI 411
+APVE++++ V E E +E+E E E A ++E + + ++P+
Sbjct: 740 EAPVEESEVLVEKAEASVEEAEVPVDEVEASVEEAEAPAHEAEAPVEEAKSSIEEAEVPV 799
Query: 410 EAQPEDLEKAQLVDLPVENVAEPEDL 333
E +E+A++ + E AE D+
Sbjct: 800 EEAEVPVEEAEVPEKGAEAPAEGSDV 825
Score = 29.5 bits (63), Expect = 3.3
Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Frame = -3
Query: 698 EDADVLADSVNFXXXXXXXXXXXXXXXXXXSFVDNVDAPVEDADLQVAPVNIVDEPVEKT 519
E+A+ L + + V+ ++AP+E A A VD PV++
Sbjct: 673 EEAETLVEETKVEEDKAPIQEAEASVKKAEATVEEIEAPIERAKEVEAQSKEVDAPVKEA 732
Query: 518 NE---EIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLE-KAQLVDLPVENV 351
E E E + + A ++E V VD +EA E+ E A + PVE
Sbjct: 733 EAPAGEAEAPVEESEVLVEKAEASVEE---AEVPVD-EVEASVEEAEAPAHEAEAPVEEA 788
Query: 350 AEPEDLSPVQVVNPIVENSQSEYPGK 273
+ + V V V ++E P K
Sbjct: 789 KSSIEEAEVPVEEAEVPVEEAEVPEK 814
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 32.3 bits (70), Expect = 0.47
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Frame = -3
Query: 581 VEDADLQVAPVNIVDEPVEKTNEEIENDSE------VGSISWVEYPAELDEDGNGLVIVD 420
+E DL++ PVN D V + ++IE D++ + I V+Y ++ +G + D
Sbjct: 1024 MEPKDLEL-PVNEPDVEVYEPQQDIEIDADGLRAQILSPIMSVDYDSDASANGGHMRRED 1082
Query: 419 LPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNP--IVENSQSEYPGKRY 267
E P D+ K P +AE E + V V P E + EY + Y
Sbjct: 1083 PQNEESPPDIAKDDKPLSPEAPIAEAESILLVAEVEPGAKFETCEPEYLKEDY 1135
>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
Length = 1093
Score = 29.9 bits (64), Expect = 2.5
Identities = 28/87 (32%), Positives = 39/87 (44%)
Frame = -3
Query: 593 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLP 414
VD P+ D P+ EPV+K +NDS+ SI+ P + G D P
Sbjct: 862 VDKPIAKKDSDDKPITAEGEPVDK--PIAKNDSDDKSITAEGEPDDKPITTKG-ESEDAP 918
Query: 413 IEAQPEDLEKAQLVDLPVENVAEPEDL 333
I A D EKA + ++V E +DL
Sbjct: 919 ITATLNDPEKA-IASGGEKSVIEKDDL 944
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 337 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGY 468
SS S++ S+ S+S + S SS +S S+ +S SSS S GY
Sbjct: 589 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASLGY 632
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 599 LRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPXLEHRGFLRSLQSXPGNRHPH 760
+RS PG R + +R +Q GH R GF RS Q PG+ H
Sbjct: 158 IRSYPVTPGCTRSYQGSEKSVRGVQVISGHARSYPVTPGFTRSYQVIPGHTRSH 211
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 557 RLVNRRPQLEHRRCLRS*QNQPG-H-RRPQLEHRRCLRSLQNQPGHRRPXLEHR 712
RL RRP+L HRR R +P H RRP+L RR + HRR HR
Sbjct: 163 RLHTRRPRL-HRRRTRLHTRRPRLHTRRPRLHRRRPRLHTRRPRRHRRRPRLHR 215
>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 96 RFRNSLKDTQTF-SKKV*KN*LLI*EMLFIKYRKIMNVNV 212
RFRNS+KDT+ F S V + L+ + I+ RK+ N V
Sbjct: 111 RFRNSVKDTRVFRSSDVGSDHYLVCATVKIRLRKVQNGRV 150
>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2735
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 255 CSVRVS-FAGVFTLTVLNDGVNYL 323
CS+RV+ + TLTV DGVNY+
Sbjct: 2036 CSIRVNRYRNAATLTVEKDGVNYI 2059
>SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047)
Length = 594
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 472 LNILLNWTKMETDLLLLIYLLR-HNPKI*RKPSLLTFPSKMSLNQKT 335
+ + L W K E DL L+YLL KP++L S++ N++T
Sbjct: 395 VTVSLPWKKSEEDLSYLLYLLSVQMSNNTDKPAVLESTSRVGANKRT 441
>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/94 (26%), Positives = 44/94 (46%)
Frame = -3
Query: 599 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVD 420
+ V+ E+ + + + + +E EK NEE EN+ E + E ED G
Sbjct: 48 EEVEEEEEEEEEKEDEIEVEEEEEEKENEEEENEDE------EDEEEEEGEDPKG----- 96
Query: 419 LPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQV 318
P+E+ E + KA + DL + PE++ V++
Sbjct: 97 PPLESYSEQMSKALIGDL---SAKFPENVKVVRI 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,315,918
Number of Sequences: 59808
Number of extensions: 392776
Number of successful extensions: 1064
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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