Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c11f
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    30   0.31 
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   3.8  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    26   5.1  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   8.8  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   8.8  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    25   8.8  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   8.8  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   8.8  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   8.8  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    25   8.8  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -3

Query: 347 SLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQ 198
           SLQ Q G+ H Q+  R      QN+Q  R   R F  + S   LH RS+Q
Sbjct: 126 SLQLQGGDMHRQV-YRWQQEVDQNKQIRRGRSRSFSAKVSDPNLHLRSVQ 174


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 89  IKPVQIADIPIPKYESIDAGMYIIPDEVIQ---ELALAGIELSENV 217
           ++ + I + PIP  +++D+   IIP   ++   ++ +AGI    NV
Sbjct: 298 VRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNV 343


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = -3

Query: 332 PGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQSRPRRVLE*LRRG 159
           P + +   +LRH LR  ++++ +   +RE    + +R ++    +++  +  E  RRG
Sbjct: 190 PQSEYELWKLRHLLRKKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDAEASRRG 247


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = +3

Query: 57  SHSLERRPPHQSNPSKSRISQYRN---TKA----STLECTSSPTKSFKN 182
           +H   RRPP Q +   ++  + +N   TKA    S++E T SP K  K+
Sbjct: 87  AHPRSRRPPRQISIDSAKKEETKNTGSTKAADTKSSVEATISPLKDTKS 135


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 382 GVLNWSIEVFYEAYRVSREIGILNWSFDIFYEVYRINREIDVVN 251
           G LN++ EV          +G  NW  D FYE Y ++ EID+V+
Sbjct: 492 GDLNYTSEVKERTSSRLSAVGSENWVDDDFYE-YLLS-EIDMVS 533


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = -1

Query: 298 IFYEVYRINR---EIDVVNGNFNVKNRNVVYIFAQFNPGQGEFLNDFVGDDVHSSVDAFV 128
           +F+ VY +        V  G +N   R +   +  F  G   F+N FV   +  +  A  
Sbjct: 129 MFFTVYALGELAVSYPVAGGFYNYAVRFIDPAWG-FAVGWNYFMNYFVTFPLELTTCAIT 187

Query: 127 FRYW 116
           FRYW
Sbjct: 188 FRYW 191


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 341 QSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQ 225
           Q +P  RH    L    +  +  +  +R Q+E + QKS+
Sbjct: 282 QDRPDKRHGTYSLEEIDKQRKEFENRQRLQKEKEFQKSR 320


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 228 ATLSTFSLNSIPAKASS*MTSSGMMYIPASMLSYFGI 118
           AT+S++ LN+    A+S  TSSG     +  +SYFG+
Sbjct: 530 ATVSSW-LNTPALSAASARTSSGRNSSESDRVSYFGL 565


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 278 SVNFVENVEAPVENADFPADSVSFVENLD 364
           +++ +E  E+P +N+D+  DSV  + + D
Sbjct: 720 NIDELEKAESPQQNSDYANDSVQHLLDFD 748


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -1

Query: 370 WSIEVFYEAYRVSREIGILNWSFDIFYEVYRINREIDVVNGNFNV 236
           W   +  E  R  ++  +  W FD   + + +   ID  +GN  V
Sbjct: 453 WCTNIIDEQQRNVKQTALKFWQFDSVQKTWVLMTRIDNPHGNLEV 497


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -1

Query: 289 EVYRINREIDVV-NGNFN 239
           EVY INR +D + +GN+N
Sbjct: 35  EVYEINRTVDFIKSGNYN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,623
Number of Sequences: 5004
Number of extensions: 49645
Number of successful extensions: 223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)