Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c11f
(622 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC040168-1|AAH40168.1| 479|Homo sapiens v-ets erythroblastosis ... 35 0.20
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 32 1.9
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 32 1.9
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 31 4.3
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 31 4.3
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 31 4.3
AY605045-1|AAT35812.1| 199|Homo sapiens HCV F-transactivated pr... 30 5.7
DQ328220-1|ABC59627.1| 178|Homo sapiens actin related protein 2... 30 7.6
CR407667-1|CAG28595.1| 178|Homo sapiens ARPC3 protein. 30 7.6
BC078162-1|AAH78162.1| 178|Homo sapiens actin related protein 2... 30 7.6
BC067747-1|AAH67747.1| 178|Homo sapiens actin related protein 2... 30 7.6
AF006086-1|AAB64191.1| 178|Homo sapiens p21-Arc protein. 30 7.6
>BC040168-1|AAH40168.1| 479|Homo sapiens v-ets erythroblastosis
virus E26 oncogene homolog (avian) protein.
Length = 479
Score = 35.1 bits (77), Expect = 0.20
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = -3
Query: 563 FPHSSFQLVHPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGH 384
FP++S V+P +Q + RP L + RS GH PQ + + S +
Sbjct: 231 FPNTS---VYPEATQR--ITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVPKTED 285
Query: 383 RRPQLEHRGFLRSLQSQPGNRHS-QLELRHFLRSLQNQQGNRRC 255
+RPQL+ L S+ N S Q++L FL L + N C
Sbjct: 286 QRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNSSC 329
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 31.9 bits (69), Expect = 1.9
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = -3
Query: 470 RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFL 291
R+ P H RP+ HR RS + RRP R R + P +R S+ +R
Sbjct: 287 RTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 344
Query: 290 RSLQNQQGN 264
RS + G+
Sbjct: 345 RSSASLSGS 353
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 31.9 bits (69), Expect = 1.9
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = -3
Query: 470 RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFL 291
R+ P H RP+ HR RS + RRP R R + P +R S+ +R
Sbjct: 287 RTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 344
Query: 290 RSLQNQQGN 264
RS + G+
Sbjct: 345 RSSASLSGS 353
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.7 bits (66), Expect = 4.3
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -3
Query: 470 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 300
R+ P H RP+ HR RS + +P RRP R R + P +R S+ +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346
Query: 299 HFLRSLQNQQGN 264
RS + G+
Sbjct: 347 RRRRSSASLSGS 358
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.7 bits (66), Expect = 4.3
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -3
Query: 470 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 300
R+ P H RP+ HR RS + +P RRP R R + P +R S+ +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346
Query: 299 HFLRSLQNQQGN 264
RS + G+
Sbjct: 347 RRRRSSASLSGS 358
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.7 bits (66), Expect = 4.3
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -3
Query: 470 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 300
R+ P H RP+ HR RS + +P RRP R R + P +R S+ +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346
Query: 299 HFLRSLQNQQGN 264
RS + G+
Sbjct: 347 RRRRSSASLSGS 358
>AY605045-1|AAT35812.1| 199|Homo sapiens HCV F-transactivated
protein 1 protein.
Length = 199
Score = 30.3 bits (65), Expect = 5.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -3
Query: 290 RSLQNQQGNRRCQREFQCQKSQ---RCLHFRSIQSRPRR 183
R LQN +GN RCQR+ + ++ CL I PRR
Sbjct: 12 RPLQNVEGNNRCQRKAKNYGNKYFIHCLDLEKITLSPRR 50
>DQ328220-1|ABC59627.1| 178|Homo sapiens actin related protein 2/3
complex protein.
Length = 178
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 359 GF-LRSLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQ 225
GF L ++ ++P N+ +R +L+ L+ + G R C++ F Q +
Sbjct: 110 GFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDK 155
>CR407667-1|CAG28595.1| 178|Homo sapiens ARPC3 protein.
Length = 178
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 359 GF-LRSLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQ 225
GF L ++ ++P N+ +R +L+ L+ + G R C++ F Q +
Sbjct: 110 GFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDK 155
>BC078162-1|AAH78162.1| 178|Homo sapiens actin related protein 2/3
complex, subunit 3, 21kDa protein.
Length = 178
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 359 GF-LRSLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQ 225
GF L ++ ++P N+ +R +L+ L+ + G R C++ F Q +
Sbjct: 110 GFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDK 155
>BC067747-1|AAH67747.1| 178|Homo sapiens actin related protein 2/3
complex, subunit 3, 21kDa protein.
Length = 178
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 359 GF-LRSLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQ 225
GF L ++ ++P N+ +R +L+ L+ + G R C++ F Q +
Sbjct: 110 GFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDK 155
>AF006086-1|AAB64191.1| 178|Homo sapiens p21-Arc protein.
Length = 178
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 359 GF-LRSLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQ 225
GF L ++ ++P N+ +R +L+ L+ + G R C++ F Q +
Sbjct: 110 GFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDK 155
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,680,706
Number of Sequences: 237096
Number of extensions: 1669967
Number of successful extensions: 4735
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4705
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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