Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c11f
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical ... 32 0.29
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 29 2.0
AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical ... 29 2.7
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 28 4.7
AC006790-1|AAY55890.1| 309|Caenorhabditis elegans Hypothetical ... 28 4.7
AL132877-9|CAC70109.2| 529|Caenorhabditis elegans Hypothetical ... 28 6.2
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ... 28 6.2
AL032626-1|CAA21538.1| 183|Caenorhabditis elegans Hypothetical ... 28 6.2
>AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical
protein F32D1.9 protein.
Length = 513
Score = 32.3 bits (70), Expect = 0.29
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +2
Query: 176 QELALAGIELSENVDNVAIFDIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSV---- 343
+E A+A +E SEN D + + D IP ++V ++ +EN+E +++++ A++
Sbjct: 17 EEHAVAPVEDSENPDVIQLDDDVIPEEDVPDDEETAENLENLENVLDDSEIIAENSGEAD 76
Query: 344 SFVENLDAPVEDAD 385
VE D P D D
Sbjct: 77 QEVEEEDNPFADDD 90
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 497 PQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRH 318
PQ+ R + QP PQ +H+R ++ Q PQ + R + Q+Q R
Sbjct: 524 PQMSQMRMQQQQPQQPNMNSPQSQHQRAPNNMNMQQNLPNPQQQMR--IPQAQNQMQQRI 581
Query: 317 SQLELRHF-LRSLQNQQG 267
Q+ + ++ QN G
Sbjct: 582 PQVSPQQMQMQQQQNMNG 599
>AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical
protein ZC178.1 protein.
Length = 542
Score = 29.1 bits (62), Expect = 2.7
Identities = 32/118 (27%), Positives = 51/118 (43%)
Frame = -1
Query: 505 IGVLNWSIDVVYEADRISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSRE 326
IGV+ +D V + IGVL +D V V + IGV+ ++ V
Sbjct: 427 IGVVLEELDSVELVMSVEYTIGVLLEELDSVELVMSVEDTIGVVLEELDSVELVMSVEYT 486
Query: 325 IGILNWSFDIFYEVYRINREIDVVNGNFNVKNRNVVYIFAQFNPGQGEFLNDFVGDDV 152
IG+L D V + I VV G +N +VV + P F+++ +G++V
Sbjct: 487 IGVLLEELDSVELVMPVVDTIGVVTG-LGTENCDVVENSFEVLPDLWFFMSN-MGENV 542
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/89 (25%), Positives = 35/89 (39%)
Frame = -1
Query: 505 IGVLNWSIDVVYEADRISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSRE 326
IGV+ +D V + IGV+ +D V V + IGV+ ++ V
Sbjct: 187 IGVVLEELDSVELVRSVEDTIGVVLEELDSVELVMSVEDTIGVVREKLDSVELVMSVEDT 246
Query: 325 IGILNWSFDIFYEVYRINREIDVVNGNFN 239
IG++ D V + I VV N
Sbjct: 247 IGVVREKLDSVELVMSVEDTIGVVLEELN 275
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 473 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELD 622
D DAP+ D +N+VDE +++ ++E+D E E+ AE D
Sbjct: 2429 DAQDAPLAAPDAPPG-INLVDEIMQQVQRDVEDDEEDEDGDQNEHEAEED 2477
>AC006790-1|AAY55890.1| 309|Caenorhabditis elegans Hypothetical
protein Y49F6B.13 protein.
Length = 309
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 289 EVYRINREIDVVNGNFNVKNRNVVYIFAQFNPG--QGEFLN 173
+V+R+ + I NGN N+ ++ F+PG +G F+N
Sbjct: 212 DVFRVLKFISPQNGNSNIDASKLIQQLTGFSPGFREGHFVN 252
>AL132877-9|CAC70109.2| 529|Caenorhabditis elegans Hypothetical
protein Y105E8B.3 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +2
Query: 236 DIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDAPV 373
DIE+P ++ P DS N EN E E + AD VE A V
Sbjct: 415 DIELPPEDFKRPADSENDDENDEDEEEGEEEDADGHVAVEEQVAKV 460
>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
protein Y46G5A.6 protein.
Length = 1002
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 479 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAEL 619
+D P D+++ +A N+ VEK+ E+++ G + AEL
Sbjct: 858 LDEPPSDSEVYIAKTNLAPVRVEKSAEKVKKSRNSGQKLSTDSSAEL 904
>AL032626-1|CAA21538.1| 183|Caenorhabditis elegans Hypothetical
protein Y37D8A.1 protein.
Length = 183
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -3
Query: 476 CLRS*QNQPGHRRPQLE-HRRCLRSLQNQPGHRRPQLEHRGF-LRSLQSQPGNRHSQLEL 303
CLR Q P Q + H L L PG GF L S+ P ++ + E+
Sbjct: 80 CLRKLQKSPNKIAGQKDLHALALSHLLPIPGEN-------GFPLNSMYKAPQSKPDEDEM 132
Query: 302 RHFLRSLQNQQGNRRCQREF 243
R +L+ ++ + G R C F
Sbjct: 133 RAYLQQIRQEIGARLCDLAF 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,949,679
Number of Sequences: 27780
Number of extensions: 279805
Number of successful extensions: 1183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -