Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c11f
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    32   0.27 
At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containi...    30   1.1  
At5g62580.1 68418.m07855 expressed protein                             29   2.5  
At1g20060.1 68414.m02511 kinesin motor protein-related                 29   3.3  
At4g25270.1 68417.m03635 pentatricopeptide (PPR) repeat-containi...    28   4.3  
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro...    28   4.3  
At3g20540.1 68416.m02600 DNA-directed DNA polymerase family prot...    28   5.7  
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR...    28   5.7  
At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    28   5.7  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    28   5.7  
At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low ...    27   7.6  
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet...    27   7.6  
At2g22610.1 68415.m02680 kinesin motor protein-related                 27   7.6  
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)...    27   7.6  

>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
            protein (PFT1) PMID: 12815435
          Length = 836

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
 Frame = -3

Query: 533  PRCSQGRLVNRRPQLEHRRCLRS*QNQPGH----RRPQLEHRRCLRSLQNQPGHRRPQLE 366
            P   Q +      Q + ++ ++  Q Q  H    + PQL+ ++     Q Q  H+  QL+
Sbjct: 679  PNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQ 738

Query: 365  HRGFLRSLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREF----QCQKSQRCLHFRSIQ 198
            H    +  Q Q   +H   +L+H  +  Q      + Q++     Q Q+    L+    Q
Sbjct: 739  HHQQQQQQQQQQQQQHQLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQTSPLNQMQQQ 798

Query: 197  SRPRRVL 177
             +P++++
Sbjct: 799  QQPQQMV 805


>At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 698

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 349 EAYRVSREIGILNWSFDIFYEVYRINREIDVVNGNFNVKNRNVV 218
           EAY +S E G      D++ + YR+++ I+++ G   V+   V+
Sbjct: 522 EAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGIDQVEKDAVI 565


>At5g62580.1 68418.m07855 expressed protein
          Length = 615

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 84  HQSNPSKSRISQYRNTKASTLECTSSPTKSFKNSP 188
           H S  S SR+S YRN  A T E  +S  + F  SP
Sbjct: 541 HDSKYSASRMSTYRNRNAETTEIQNSRHR-FNGSP 574


>At1g20060.1 68414.m02511 kinesin motor protein-related
          Length = 951

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
 Frame = +2

Query: 116  PIPKYESIDAGM--YIIPD-EVIQELALAGIELSENVDNVAIFDIEIPVDNVDFPVDSVN 286
            P+P   ++D      I P  E   E +     LS+NV +  +    +  +N   P  SVN
Sbjct: 692  PVPNVRNVDVDSCNLINPRREASTEESSESPVLSKNVKDAELVPCHLSSENDAEPRQSVN 751

Query: 287  FVENVEAPVENADFPADSVSFV--ENLDAPV---EDADVLADSVN 406
              ENV  P       A+   F   +N D P    E  +V  D +N
Sbjct: 752  SEENVGIPSTITHVEAEVTDFQRDQNQDDPTPSPEQVEVSQDCIN 796


>At4g25270.1 68417.m03635 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 527

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 51  LSSHSLERRPPHQSNPSKSRISQYRNTKASTLECTS-SPT 167
           +SS S++++P H     + R +QY N   ++L  T  SPT
Sbjct: 16  VSSSSMKKKPRHHQQLKQHRQNQYNNNGFTSLSFTKPSPT 55


>At3g25500.1 68416.m03171 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 1051

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 51  LSSHSLERRPPHQSNPSKSRISQYRNTKASTLECTSSPTKSFKNSPWPGLN 203
           +S    E +PP  S P  + ++ YR  ++ +L   +S +   KNS   GLN
Sbjct: 306 MSPKRSEPKPPVISTPEPAELTDYRFVRSPSLS-LASLSSGLKNSDEVGLN 355


>At3g20540.1 68416.m02600 DNA-directed DNA polymerase family protein
           similar to PolI-like DNA polymerase [Oryza sativa]
           GI:19912795; contains Pfam profiles PF01612: 3'-5'
           exonuclease, PF00476: DNA polymerase I family A
          Length = 1034

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 102 KSRISQYRNTKASTLECTSSPTKSFKNSPWPGLN 203
           K R +++RN K   +     PT+ F  S WP ++
Sbjct: 590 KKRATKFRNIKLHRISDRPLPTEKFTASGWPSVS 623


>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 457 ISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYE 347
           +S++    +WS+D + E+ +  +DIG +   + VFYE
Sbjct: 73  LSKNYASSSWSLDELLEILKCKEDIGQI--VMTVFYE 107


>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/79 (30%), Positives = 35/79 (44%)
 Frame = -3

Query: 461 QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFLRSL 282
           Q Q     PQL H+  +   Q Q      Q + +  L   QSQ    HSQ +L+   + L
Sbjct: 402 QQQQQLSSPQL-HQSSMSLNQQQISQIIQQQQQQSQLG--QSQMNQSHSQQQLQQMQQQL 458

Query: 281 QNQQGNRRCQREFQCQKSQ 225
           Q Q   +  Q++ Q Q+ Q
Sbjct: 459 QQQPQQQMQQQQQQQQQMQ 477


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/79 (30%), Positives = 35/79 (44%)
 Frame = -3

Query: 461 QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFLRSL 282
           Q Q     PQL H+  +   Q Q      Q + +  L   QSQ    HSQ +L+   + L
Sbjct: 402 QQQQQLSSPQL-HQSSMSLNQQQISQIIQQQQQQSQLG--QSQMNQSHSQQQLQQMQQQL 458

Query: 281 QNQQGNRRCQREFQCQKSQ 225
           Q Q   +  Q++ Q Q+ Q
Sbjct: 459 QQQPQQQMQQQQQQQQQMQ 477


>At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low
           similarity to coproporphyrinogen III oxidase from
           Geobacillus stearothermophilus [GI:2104798]; contains
           Pfam profile PF04055: radical SAM domain protein
          Length = 484

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 484 IDVVYEADRISRDIGVLNWSIDVV 413
           +  VYEA    ++ GV NWS+D++
Sbjct: 210 VSQVYEAIEFVKECGVENWSMDLI 233


>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
           beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
          Length = 792

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 566 ENDSEVGSISWVEYPAE 616
           +ND  +GSI W+ YP E
Sbjct: 560 KNDPRIGSIIWIGYPGE 576


>At2g22610.1 68415.m02680 kinesin motor protein-related 
          Length = 1093

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +2

Query: 242 EIPVDNVDFPVDSVNFVENVEAP-VENADFPADSVSFVENLDAPVEDA-DVLADSVN 406
           ++ +D+  FPVD +N V ++ +P + + DF +D    +E  D  ++D  D L DS++
Sbjct: 3   DVQIDDT-FPVD-LNGVTSLCSPEIPSFDFVSDETEKLEIGDTSIDDCDDALGDSMD 57


>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
           Similar to Arabidopsis luminal binding protein
           (gb|D89342); contains Pfam domain PF00012: dnaK protein
          Length = 678

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
 Frame = +2

Query: 275 DSVNFVENVEAPVENADFPADSVSFVENLDAPVEDADVLADSVNFXXXXXXXXXXXXXXX 454
           ++  F E  +   E  D      ++V N+ + V D + LA  ++                
Sbjct: 566 EAEEFAEEDKIMKEKIDARNKLETYVYNMKSTVADKEKLAKKIS---DEDKEKMEGVLKE 622

Query: 455 XXXXFVDNVDAPVEDADLQVAPVNIVDEPV-----EKTNEEIENDSEVGSISW 598
                 +NV+A  ED D ++  V +V +PV     EKT  E E+  E+ ++S+
Sbjct: 623 ALEWLEENVNAEKEDYDEKLKEVELVCDPVIKSVYEKTEGENEDTMEMITMSY 675


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,109,721
Number of Sequences: 28952
Number of extensions: 257565
Number of successful extensions: 961
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)