Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c10r
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0194 + 26287854-26288233,26289810-26290044 251 5e-67
01_06_0526 - 30016524-30016973 140 1e-33
01_06_0525 - 30014497-30014731,30015509-30015573 116 1e-26
03_04_0096 + 17270261-17270424,17270573-17270669 94 1e-19
07_01_0122 - 926971-927378 78 8e-15
10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013... 29 3.6
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 29 4.7
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622... 28 8.3
>05_06_0194 + 26287854-26288233,26289810-26290044
Length = 204
Score = 251 bits (614), Expect = 5e-67
Identities = 113/155 (72%), Positives = 125/155 (80%)
Frame = -1
Query: 484 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 305
S AE ++++DDL+NW R+GS+WPMTFGLACCAVEMMH A RYD DR+GV+FR SPRQ
Sbjct: 48 SKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQ 107
Query: 304 SDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPV 125
SD MIVAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN GCDRIVPV
Sbjct: 108 SDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 167
Query: 124 DIYVPGCPPTAEALLYGVLQLQKKIKRMKTIQVWY 20
DIYVPGCPPTAEALLYGVLQLQKKI R + W+
Sbjct: 168 DIYVPGCPPTAEALLYGVLQLQKKINRRRDFLHWW 202
>01_06_0526 - 30016524-30016973
Length = 149
Score = 140 bits (339), Expect = 1e-33
Identities = 60/80 (75%), Positives = 69/80 (86%)
Frame = -1
Query: 484 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 305
S AE ++++DDL+NW R+GS+WPMTFGLACCAVEMMH A RYD DR+GV+FR SPRQ
Sbjct: 43 SKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQ 102
Query: 304 SDVMIVAGTLTNKMAPALRK 245
SD MIVAGTLTNKMAPALRK
Sbjct: 103 SDCMIVAGTLTNKMAPALRK 122
>01_06_0525 - 30014497-30014731,30015509-30015573
Length = 99
Score = 116 bits (280), Expect = 1e-26
Identities = 55/78 (70%), Positives = 58/78 (74%)
Frame = -1
Query: 253 LRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYG 74
L +VYDQMP+PRWVISMGSCAN GCDRIVPVDIYVPGCPPTAEALLYG
Sbjct: 20 LVEVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG 79
Query: 73 VLQLQKKIKRMKTIQVWY 20
VLQLQKKI R K W+
Sbjct: 80 VLQLQKKINRRKDFLHWW 97
>03_04_0096 + 17270261-17270424,17270573-17270669
Length = 86
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/55 (76%), Positives = 45/55 (81%)
Frame = -1
Query: 409 MTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 245
MTFGLAC AVEMMH A RYD DR+GV+F SPRQSD MI+ GTLTNKM PALRK
Sbjct: 1 MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRK 55
>07_01_0122 - 926971-927378
Length = 135
Score = 77.8 bits (183), Expect = 8e-15
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = -1
Query: 397 LACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 245
LA CAVEMMH A YD DR+ V+FR SPRQSD MI+ GTLTNKM PAL K
Sbjct: 58 LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGK 108
>10_08_0392 +
17500748-17500877,17501006-17501280,17501321-17501388,
17501516-17501632,17501802-17501943,17502622-17502912,
17503507-17503650
Length = 388
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -1
Query: 421 SLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKM 263
S+ + L + ++ IAA R + +++++SP QS V++V G +K+
Sbjct: 176 SVTDLQLNLLGSIIAVLTIAATRLKVSSTQLLYQSSPYQSAVLLVTGPFVDKL 228
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 375 ISTAQQARPKVMGQREPFLPQFNKSSSRATAISAILLASWKGEYGRFSVG 524
+S + P +G+RE FLP+ +RA+A+ A+ +G+ + G
Sbjct: 1358 LSLTAKIAPATLGERETFLPRAPNLDNRASALLQKEFANLRGKSSKAKGG 1407
>07_03_1492 +
26960876-26960986,26961910-26962074,26962153-26962271,
26962559-26962633,26963063-26963156,26963239-26963298,
26963474-26963539,26963622-26963720,26964027-26964035
Length = 265
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 431 EERFPLAHDLWSSLLRCR-DDAYCC 360
E R LAH WS LLR + D+AYCC
Sbjct: 92 EGRKDLAH-CWSILLRQKVDEAYCC 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,050,325
Number of Sequences: 37544
Number of extensions: 440725
Number of successful extensions: 1051
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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