Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c10f
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0194 + 26287854-26288233,26289810-26290044                      236   9e-63
01_06_0526 - 30016524-30016973                                        140   9e-34
01_06_0525 - 30014497-30014731,30015509-30015573                      101   6e-22
03_04_0096 + 17270261-17270424,17270573-17270669                       94   1e-19
07_01_0122 - 926971-927378                                             78   7e-15
10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013...    29   3.1  
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    29   4.1  
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622...    28   7.2  
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    27   9.6  

>05_06_0194 + 26287854-26288233,26289810-26290044
          Length = 204

 Score =  236 bits (578), Expect = 9e-63
 Identities = 105/140 (75%), Positives = 115/140 (82%)
 Frame = +3

Query: 222 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 401
           S  AE  ++++DDL+NW R+GS+WPMTFGLACCAVEMMH  A RYD DR+GV+FR SPRQ
Sbjct: 48  SKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQ 107

Query: 402 SDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPV 581
           SD MIVAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPV
Sbjct: 108 SDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 167

Query: 582 DIYVPGCPPTAEALLYGVLQ 641
           DIYVPGCPPTAEALLYGVLQ
Sbjct: 168 DIYVPGCPPTAEALLYGVLQ 187


>01_06_0526 - 30016524-30016973
          Length = 149

 Score =  140 bits (339), Expect = 9e-34
 Identities = 60/80 (75%), Positives = 69/80 (86%)
 Frame = +3

Query: 222 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 401
           S  AE  ++++DDL+NW R+GS+WPMTFGLACCAVEMMH  A RYD DR+GV+FR SPRQ
Sbjct: 43  SKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQ 102

Query: 402 SDVMIVAGTLTNKMAPALRK 461
           SD MIVAGTLTNKMAPALRK
Sbjct: 103 SDCMIVAGTLTNKMAPALRK 122


>01_06_0525 - 30014497-30014731,30015509-30015573
          Length = 99

 Score =  101 bits (241), Expect = 6e-22
 Identities = 46/63 (73%), Positives = 48/63 (76%)
 Frame = +3

Query: 453 LRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 632
           L +VYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG
Sbjct: 20  LVEVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG 79

Query: 633 VLQ 641
           VLQ
Sbjct: 80  VLQ 82


>03_04_0096 + 17270261-17270424,17270573-17270669
          Length = 86

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 42/55 (76%), Positives = 45/55 (81%)
 Frame = +3

Query: 297 MTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 461
           MTFGLAC AVEMMH  A RYD DR+GV+F  SPRQSD MI+ GTLTNKM PALRK
Sbjct: 1   MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRK 55


>07_01_0122 - 926971-927378
          Length = 135

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 36/51 (70%), Positives = 39/51 (76%)
 Frame = +3

Query: 309 LACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 461
           LA CAVEMMH  A  YD DR+ V+FR SPRQSD MI+ GTLTNKM PAL K
Sbjct: 58  LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGK 108


>10_08_0392 +
           17500748-17500877,17501006-17501280,17501321-17501388,
           17501516-17501632,17501802-17501943,17502622-17502912,
           17503507-17503650
          Length = 388

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 285 SLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKM 443
           S+  +   L    + ++ IAA R  +    +++++SP QS V++V G   +K+
Sbjct: 176 SVTDLQLNLLGSIIAVLTIAATRLKVSSTQLLYQSSPYQSAVLLVTGPFVDKL 228


>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
            27774929-27775110,27775191-27775368,27775453-27775605,
            27775993-27776232,27776369-27776449,27776485-27776730,
            27777151-27777240,27777536-27777778,27778365-27778529,
            27779017-27779080,27779162-27779286,27779383-27779476,
            27779647-27779714,27779798-27779989,27780618-27780752,
            27780847-27780934,27781014-27781107,27781484-27781547,
            27781657-27781708,27781911-27782014,27782099-27782158,
            27782687-27782770,27782892-27783125,27783442-27783864,
            27784675-27784736,27784867-27785521
          Length = 1700

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 331  ISTAQQARPKVMGQREPFLPQFNKSSSRATAISAILLASWKGEYGRFSVG 182
            +S   +  P  +G+RE FLP+     +RA+A+     A+ +G+  +   G
Sbjct: 1358 LSLTAKIAPATLGERETFLPRAPNLDNRASALLQKEFANLRGKSSKAKGG 1407


>07_03_1492 +
           26960876-26960986,26961910-26962074,26962153-26962271,
           26962559-26962633,26963063-26963156,26963239-26963298,
           26963474-26963539,26963622-26963720,26964027-26964035
          Length = 265

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 275 EERFPLAHDLWSSLLRCR-DDAYCC 346
           E R  LAH  WS LLR + D+AYCC
Sbjct: 92  EGRKDLAH-CWSILLRQKVDEAYCC 115


>07_03_1512 +
           27288779-27289222,27298101-27298399,27298499-27298589,
           27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 168 LPAPNPTEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMT 302
           +P  NP  KRPY     A+ +AE+   ++DDLL   +KG + P T
Sbjct: 835 VPGTNPIHKRPYR--MAANELAEVK-RQVDDLL---QKGYIRPST 873


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,549,754
Number of Sequences: 37544
Number of extensions: 405815
Number of successful extensions: 964
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)