Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c09r
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    28   0.35 
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    26   1.1  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   1.1  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   1.8  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    25   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   2.4  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   2.4  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    24   5.6  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    23   7.5  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    23   7.5  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    23   9.9  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    23   9.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    23   9.9  

>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +1

Query: 22  FSLPRLQFTITYYNFLVDFMIW*SSCWLPLVLASCRNKCTKNRIYNSDNTGLWCICNRLR 201
           +SLP L   +  Y++  D M    S W  +++   R + T N+ Y   +  LWC+  R+ 
Sbjct: 174 YSLPVLIRHVLLYDYYTDDMK--DSLWRAMIIYVSR-QVTSNK-YTKFH--LWCVQKRIG 227

Query: 202 NLRTALL 222
           N+R  L+
Sbjct: 228 NIRMYLV 234


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 212 VRRLRRRLQMHHKPVLSEL*MRFFVHLFRQEASTSGSQQE 93
           +R +  R+Q++ KP+  EL  ++F  ++ +  +  GS  E
Sbjct: 124 LRSVCERIQLNGKPISQELFTKYFFDVWERLENAVGSDSE 163


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 110 WCWLLAGTNARRIAFTI 160
           WCWL+AG     IA ++
Sbjct: 98  WCWLIAGAGCMCIALSV 114


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 103 LPLVLASCRNKCTKNRIYNSDNTGLWCICNRLRNLRT 213
           +P  L    ++C     YN +  G +CIC+ + N  T
Sbjct: 97  IPCNLRKSVDECGSENDYNHNFEGRFCICDTVYNPET 133


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
 Frame = -3

Query: 211 CGGCGDDCKC---TINQC-CQNCKCDS 143
           C  C + C C    ++ C C +CKC S
Sbjct: 23  CQDCKESCGCKSSAVDNCKCSSCKCAS 49



 Score = 25.0 bits (52), Expect = 2.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
 Frame = -3

Query: 202 CGDDCKCTINQCCQNCKCDSS----CICSGKKPA 113
           C    KC    C ++C C SS    C CS  K A
Sbjct: 15  CDCQSKCGCQDCKESCGCKSSAVDNCKCSSCKCA 48


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 134  NARRIAFTILTTLVYGAFAIVSATSARHC*WFEMRLIWLN 253
            NA+  A T  TT V+G   +V+ TSA     F  +  W N
Sbjct: 2060 NAQVTAVTTKTTNVHGDEMVVTTTSAYENEKFSSKTEWRN 2099


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 238 SHFKPLTMPCGGCGDDCKCTI 176
           S FK LT  C G  D+C C +
Sbjct: 702 SSFKTLTTMCFGGDDNCGCQV 722


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 96  LLASTGAGFLPEQMHE 143
           L+A T  G +PE++HE
Sbjct: 256 LIAKTAEGLVPEEIHE 271


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 154 YNSDNTGLWCICN 192
           YNSD +  W ICN
Sbjct: 517 YNSDTSRTWDICN 529


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 230 QTINNAVRRLRRRLQMHHKPVLS 162
           + +NNA++ L+  L++  KP L+
Sbjct: 399 EAVNNALKALQHTLKISSKPTLT 421


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +1

Query: 151 IYNSDNTGLWCICNRLRNL 207
           I+++     WC+C+ +R L
Sbjct: 79  IHDACELSAWCVCSNIREL 97


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 260  IQHLTKLVSFQTINNAVRRLRRRLQMHHKP 171
            IQHL   VSF ++ + V+   ++ ++ + P
Sbjct: 975  IQHLESEVSFNSLRSFVQEFEKKERLKNLP 1004


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 90  LPNHEID*KIIIRNCKL 40
           LPN EI+  +I+RN KL
Sbjct: 169 LPNPEINNLVILRNLKL 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,416
Number of Sequences: 5004
Number of extensions: 22386
Number of successful extensions: 65
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)