Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c09r
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   1.4  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   1.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   1.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   5.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 178 INQCCQNCKCDSSCI 134
           I +C + C CD  CI
Sbjct: 471 IYECNKRCNCDIDCI 485


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/14 (64%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
 Frame = -3

Query: 220 TMPCGGCGDDC-KC 182
           T  C GCGD C KC
Sbjct: 33  TSYCLGCGDSCHKC 46


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = -3

Query: 208 GGCGDDCKCTINQCCQNCKCDSSCICSGKKPAPV 107
           GG G   KC  N+    C       C    P P+
Sbjct: 29  GGLGGRGKCPSNEIFSRCDGRCQRFCPNVVPKPL 62


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = -3

Query: 208 GGCGDDCKCTINQCCQNCKCDSSCICSGKKPAPV 107
           GG G   KC  N+    C       C    P P+
Sbjct: 29  GGLGGRGKCPSNEIFSRCDGRCQRFCPNVVPKPL 62


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 148 DSSCICSGKKPAPVEASKKTTKS*NRLENYN 56
           DSS IC G K + V   +   +  N    YN
Sbjct: 350 DSSIICGGNKRSQVFRGRDANRQ-NSCNIYN 379


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -3

Query: 205 GCGDDCKCTINQCCQNCKCDSSC 137
           G G +C+ + N     C C   C
Sbjct: 88  GIGKECELSPNSTIAVCVCMRKC 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,329
Number of Sequences: 438
Number of extensions: 1528
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)