Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c09f
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 32 0.11
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931... 31 0.33
04_04_1245 - 32036929-32037042,32037152-32037208,32037299-320373... 31 0.33
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665... 30 0.43
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029 26 0.97
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 29 1.0
02_05_0399 + 28658667-28658922,28659287-28659443,28659527-286597... 29 1.0
02_04_0581 - 24068122-24068355,24068693-24068906,24069675-240697... 29 1.3
04_01_0377 - 4970034-4970687 27 3.1
02_05_0930 - 32801737-32801936,32802038-32802107 27 4.0
09_02_0534 - 10333065-10333072,10333462-10333597,10333720-10333902 27 5.3
06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278... 27 5.3
02_04_0411 + 22670418-22670499,22670708-22671045 27 5.3
08_01_1081 + 11058119-11059756 26 9.3
07_03_1283 + 25454981-25455019,25457660-25457740,25458583-254586... 26 9.3
06_01_0863 + 6545563-6546714 26 9.3
01_05_0482 + 22614097-22614729,22614859-22615182,22615291-226153... 26 9.3
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Frame = +3
Query: 90 PCGG---CGDDCKCTIN-QCCQN-CKCDSSC 167
PCG CG DC C N CC+ C C SC
Sbjct: 453 PCGCQQMCGKDCACVENGTCCEKYCGCSKSC 483
>12_02_0718 +
22491241-22491897,22491989-22492126,22493017-22493142,
22493389-22493493,22493650-22494046,22494144-22494273,
22494358-22494652,22494736-22495005
Length = 705
Score = 30.7 bits (66), Expect = 0.33
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = -2
Query: 192 VLASCRN--KCTKNRIYNSDNTGLWCICNRLRNLRTALLMV*NETNLVKC*ITKVLCCKT 19
V C+N + R Y+ D+ GLW + NLR + T L C + L C
Sbjct: 581 VAIGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHLLSSLRCLQ 640
Query: 18 DL 13
D+
Sbjct: 641 DV 642
>04_04_1245 -
32036929-32037042,32037152-32037208,32037299-32037375,
32037479-32037563,32037615-32037684,32038007-32038068,
32038249-32038336,32038685-32038815,32039182-32039213,
32039377-32039489,32039741-32040045,32040148-32040233,
32040350-32040425,32041002-32041097
Length = 463
Score = 30.7 bits (66), Expect = 0.33
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 69 HFK-PLTMPCGGCGDDCKCTINQCCQNCKCDSSCICSGKKPAPVEAS 206
HF P +PC GC ++ C+ + + + S +C+G K P + S
Sbjct: 169 HFSLPQVVPCRGCEEERYCSQSCADSDWETYHSLLCTGSKTEPSQRS 215
>11_04_0071 -
13165019-13165082,13165345-13165428,13166325-13166524,
13166756-13170655
Length = 1415
Score = 30.3 bits (65), Expect = 0.43
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -1
Query: 241 FSSRFHDLVVFLLASTGAGFLPEQMHEESHLQF*QHWFMVHLQSSPQPPHGIVN 80
FS H + L++S G LPE + + HLQ + VHL + P+ + +VN
Sbjct: 639 FSKLIHLRYLELISSGPGGPLPEVICQLYHLQVLDVEYWVHLSTLPRAMNDLVN 692
>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
Length = 80
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Frame = +3
Query: 135 CCQ-NCKCDSSCI----CSGKKPAPVEASKKTT 218
CC NC C SSC C G K + VE + TT
Sbjct: 3 CCGGNCGCGSSCQCGNGCGGCKYSEVEPTTTTT 35
Score = 25.8 bits (54), Expect(2) = 0.97
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 138 CQNCKCDSSCICS 176
C CKC +SC CS
Sbjct: 63 CNTCKCGTSCGCS 75
Score = 22.2 bits (45), Expect(2) = 0.97
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +3
Query: 99 GCGDDCKCTINQCCQNCK 152
GCG C+C C CK
Sbjct: 9 GCGSSCQC--GNGCGGCK 24
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Frame = +3
Query: 90 PCG---GCGDDCKCTIN-QCCQN-CKCDSSC 167
PCG CG C C N CC+ C C C
Sbjct: 650 PCGCQSACGKQCPCLTNGTCCEKYCGCPKMC 680
>02_05_0399 +
28658667-28658922,28659287-28659443,28659527-28659746,
28660549-28660602,28660671-28660750,28661269-28661351,
28661385-28661546,28661667-28662071,28662151-28662503,
28662590-28662835,28663158-28663481,28664110-28664154
Length = 794
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 84 TMPCGGCGDDCKCTINQCCQNCKCDSSCIC 173
T+ CG C DC C NC+ D+ C+C
Sbjct: 444 TVLCGICRRDCYVAHIMC--NCRIDAICLC 471
>02_04_0581 -
24068122-24068355,24068693-24068906,24069675-24069755,
24069853-24070024,24070806-24070884,24071384-24071477,
24072065-24072147,24072284-24072401,24072457-24072461
Length = 359
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +3
Query: 102 CGDDCKCT--INQCCQNCKCDSSC 167
C DDC+C C +NC C C
Sbjct: 62 CKDDCECRGLYMSCSKNCHCSDMC 85
>04_01_0377 - 4970034-4970687
Length = 217
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +3
Query: 93 CGGCGDDCKCTINQCCQN---CKCDSSCICSGKKPAPVEASKKTTKS*N 230
CG G C+ NQCC C S SG + P A K ++ N
Sbjct: 64 CGSQGGGATCSNNQCCSQYGYCGFGSEYCGSGCQNGPCRADIKCGRNAN 112
>02_05_0930 - 32801737-32801936,32802038-32802107
Length = 89
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +3
Query: 126 INQCCQN-CKCDSSCICSGKKPAPVEA 203
I QC N CKCD SC P P A
Sbjct: 61 IGQCVGNKCKCDYSCAFLPPPPPPATA 87
>09_02_0534 - 10333065-10333072,10333462-10333597,10333720-10333902
Length = 108
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 93 CGGCGDDCKCTINQCCQN-CKCDSSCICSGKKPAPVE-ASKKTTKS 224
CGG DD + +QCCQN K + C K P + + KT+KS
Sbjct: 55 CGG--DDAQLEFDQCCQNFIKSKTICQTYVKFINPRQNKASKTSKS 98
>06_01_0389 +
2779790-2779891,2780378-2781912,2782087-2782135,
2782620-2782683,2782755-2782843
Length = 612
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 203 GFHWCWLLAGTNARRIAFTILTTL 132
G H C L+ RR+AFT+ TL
Sbjct: 252 GIHGCDLVTSAGIRRLAFTLRPTL 275
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 93 CGGCGDDCKCTINQCCQNCKCDSSCICSG 179
CGG GDD C C++ +C+ C C G
Sbjct: 94 CGGGGDDGDC--GGPCEHRRCEYGC-CEG 119
>08_01_1081 + 11058119-11059756
Length = 545
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 171 CSGKKPAPVEASKKTTKS*NRLENYN 248
C GK P P A K K N E+ N
Sbjct: 443 CKGKAPPPANAKKNKKKKSNSKEHVN 468
>07_03_1283 +
25454981-25455019,25457660-25457740,25458583-25458663,
25459040-25459111,25459195-25459263
Length = 113
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 229 FHDLVVFLLASTGAGFLPEQMHEESHLQF*QHWFMVHLQSSPQPP 95
FH L ++ A+ G G +Q+ ++ F+VH+ + Q P
Sbjct: 23 FHGLARYVFAAKGVGLYKDQIIRVHRIRLLSLSFLVHVVTRHQGP 67
>06_01_0863 + 6545563-6546714
Length = 383
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 78 PLTMPCGGCGDDCKCTINQCCQNCK 152
P + PCGGCG + C +CK
Sbjct: 330 PPSEPCGGCGGVRFVPCDACSGSCK 354
>01_05_0482 +
22614097-22614729,22614859-22615182,22615291-22615396,
22615628-22615668
Length = 367
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +3
Query: 120 CTINQCCQNCKCDSSCICSGKKPAPVEASKKTTK 221
C+ + NC + +C GK+P P+ K +
Sbjct: 289 CSSHIIVANCGDSRAVLCRGKQPVPLSVDHKPNR 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,611,601
Number of Sequences: 37544
Number of extensions: 159727
Number of successful extensions: 519
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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