Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c09f
(349 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07610.1 68414.m00815 metallothionein-like protein 1C (MT-1C)... 37 0.004
At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)... 37 0.004
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 34 0.030
At3g59960.1 68416.m06692 SET domain-containing protein low simil... 34 0.030
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc... 31 0.28
At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) l... 30 0.49
At1g02580.1 68414.m00209 maternal embryogenesis control protein ... 29 0.64
At5g61850.1 68418.m07760 floral meristem identity control protei... 29 0.85
At4g30860.1 68417.m04381 SET domain-containing protein low simil... 28 2.0
At1g01880.1 68414.m00106 DNA repair protein, putative similar to... 28 2.0
At2g39540.1 68415.m04851 gibberellin-regulated family protein si... 27 2.6
At5g62970.1 68418.m07901 F-box family protein contains F-box dom... 27 3.4
At5g41390.1 68418.m05029 hypothetical protein contains 1 predict... 27 3.4
At3g27490.1 68416.m03437 DC1 domain-containing protein contains ... 27 3.4
At1g32190.1 68414.m03959 expressed protein 27 3.4
At5g24040.1 68418.m02824 F-box family protein similar to unknown... 27 4.5
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat... 27 4.5
At1g43665.1 68414.m05013 protease inhibitor/seed storage/lipid t... 26 6.0
>At1g07610.1 68414.m00815 metallothionein-like protein 1C (MT-1C)
identical to Metallothionein-like protein 1C (MT-1C).
(SP:Q38804) (Arabidopsis thaliana)
Length = 45
Score = 36.7 bits (81), Expect = 0.004
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = +3
Query: 102 CGDDCKC--TINQCCQNCKCDSSCIC 173
CGD C C N+ C NC C S+C C
Sbjct: 14 CGDSCSCEKNYNKECDNCSCGSNCSC 39
>At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)
(MT-Q) (MT-2) identical to Metallothionein-like protein
1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis
thaliana)
Length = 45
Score = 36.7 bits (81), Expect = 0.004
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = +3
Query: 102 CGDDCKC--TINQCCQNCKCDSSCIC 173
CGD C C N+ C NC C S+C C
Sbjct: 14 CGDSCSCEKNYNKECDNCSCGSNCSC 39
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 33.9 bits (74), Expect = 0.030
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Frame = +3
Query: 90 PCGG---CGDDCKCTINQ-CCQN-CKCDSSC 167
PCG CG DC C N+ CC+ C C SC
Sbjct: 610 PCGCLSMCGKDCPCLTNETCCEKYCGCSKSC 640
>At3g59960.1 68416.m06692 SET domain-containing protein low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain
Length = 352
Score = 33.9 bits (74), Expect = 0.030
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +3
Query: 102 CGDDCKCTI--NQCCQNCKCDSSC 167
CG DC C I + C +CKC S C
Sbjct: 77 CGSDCNCGILLSSCSSSCKCSSEC 100
>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
polycomb-group protein identical to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 902
Score = 30.7 bits (66), Expect = 0.28
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Frame = +3
Query: 90 PCG---GCGDDCKCTIN-QCCQN-CKCDSSC 167
PC CG +C C +N CC+ C C SC
Sbjct: 654 PCNCKIACGKECPCLLNGTCCEKYCGCPKSC 684
>At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain; identical to cDNA ASH1-like protein 3 (ASHH3)
partial cds GI:15488419
Length = 363
Score = 29.9 bits (64), Expect = 0.49
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +3
Query: 102 CGDDCKCTI--NQCCQNCKCDSSC 167
CG +C C + + C +CKC S C
Sbjct: 82 CGSNCHCGMLFSSCSSSCKCGSEC 105
>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
GI:3089625 from [Arabidopsis thaliana]; contains Pfam
profile PF00856: SET domain
Length = 689
Score = 29.5 bits (63), Expect = 0.64
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +3
Query: 69 HFKPLTMPCGGCGDDCKC-TINQCCQN-CKCDSSC 167
H+ P T CG C C T CC+ C C C
Sbjct: 446 HYTPCTCK-SKCGQQCPCLTHENCCEKYCGCSKDC 479
>At5g61850.1 68418.m07760 floral meristem identity control protein
LEAFY (LFY) identical to PIR|B38104 LFY floral meristem
identity control protein, splice form 2 - Arabidopsis
thaliana; contains Pfam profile PF01698: Floricaula /
Leafy protein
Length = 420
Score = 29.1 bits (62), Expect = 0.85
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 219 W*SSCWLPLVLASCRNKCTKNRIYNS-DNTGLWCICNRLRNL 97
W +C+ PLV +CR+ + ++N+ +W + +LR L
Sbjct: 340 WRQACYKPLVNIACRHGWDIDAVFNAHPRLSIWYVPTKLRQL 381
>At4g30860.1 68417.m04381 SET domain-containing protein low
similarity to IL-5 promoter REII-region-binding protein
[Homo sapiens] GI:12642795; contains Pfam profile
PF00856: SET domain
Length = 497
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = +3
Query: 93 CG-GCGDDCKCTIN--QCCQNCKCDSSCICSGKKPAPVEASKKTTKS 224
CG C C C + C + C C SC G +P E K K+
Sbjct: 290 CGPNCDRSCVCRVQCISCSKGCSCPESC---GNRPFRKEKKIKIVKT 333
>At1g01880.1 68414.m00106 DNA repair protein, putative similar to
Swiss-Prot:P28706 DNA repair protein rad13
[Schizosaccharomyces pombe]; similar to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472
Length = 570
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 66 SHFKPLTMPCGGCGD--DCKCTINQCCQNCKCDSSCICSGKKP 188
S K + C CG + C++C CDS CI KKP
Sbjct: 269 SEMKKRSPHCSRCGHLGSKRTHFKSSCEHCGCDSGCI---KKP 308
>At2g39540.1 68415.m04851 gibberellin-regulated family protein
similar to SP|P27057 GAST1 protein precursor
{Lycopersicon esculentum}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 87
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 99 GCGDDCKCTINQCCQNCKCDSSCICSGKKPAPVEASKKTTK 221
G ++C N CCQ C C S K P K +K
Sbjct: 41 GQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSK 81
>At5g62970.1 68418.m07901 F-box family protein contains F-box domain
Pfam:PF00646
Length = 449
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 101 LRRRLQMHHKPVLSEL*MRFFVHLFRQE 184
+ + L +H PV+ L ++FF +F+ E
Sbjct: 88 IEKNLPLHSSPVIESLRLKFFTEVFQPE 115
>At5g41390.1 68418.m05029 hypothetical protein contains 1 predicted
transmembrane domain;
Length = 297
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 87 MPCGGCGDDCKCTINQCCQNCKCDSSCICSGKKPA 191
MPC G KC ++C Q C C+C G A
Sbjct: 69 MPCSG-----KCGESKCPQFCLATEVCLCFGNSVA 98
>At3g27490.1 68416.m03437 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 93 CGGCGDDCKCTINQCCQNCKCDSSCICSGKKPAPVEAS 206
C CG+D + + C CK + C+ K P P+ S
Sbjct: 204 CHICGEDTQHLLYHC-DICKFNLDLRCAAKSPPPIALS 240
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Frame = +3
Query: 84 TMPCGGCGDDCKCTINQC--CQNCK----CDSSCICSG 179
T C C KC C C C C SSC CSG
Sbjct: 356 TFKCSSCFGKPKCPKCSCWKCLKCPDTECCRSSCCCSG 393
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +3
Query: 78 PLTMPCGGCGDDCKCTINQCCQNCKCDSSCICSGKKPAP 194
P C C C + CC KC S C GK P
Sbjct: 334 PTLKGCFSCCKKPSCVSSCCCPTFKCSS---CFGKPKCP 369
>At5g24040.1 68418.m02824 F-box family protein similar to unknown
protein (gb|AAD22308.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 373
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 78 PLTMPCGGCGDDC 116
PL + GGCGDDC
Sbjct: 52 PLPLDPGGCGDDC 64
>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
bHLH127 transcription factor
Length = 880
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 229 FHDLVVFLLASTGAGFLPEQMHEESHLQF*QHWFMVHLQSSPQPP 95
+ +++ + S G G +P MHE + QF H M ++ +PP
Sbjct: 440 YESMLLCQMMSMGHGMMPPMMHEGNTQQFMPHMAM-GMKGMNRPP 483
>At1g43665.1 68414.m05013 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
profile: PF00234 protease inhibitor/seed storage/LTP
family
Length = 123
Score = 26.2 bits (55), Expect = 6.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 132 QCCQNCKCDSSCICSGKKPAPVE 200
+CC+N K SC+C + +E
Sbjct: 55 ECCKNLKIQKSCLCDYMENPSIE 77
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,114,887
Number of Sequences: 28952
Number of extensions: 132056
Number of successful extensions: 465
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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